openworm/BlueBrainProjectShowcase
A project to illustrate how models and data from the Blue Brain Project can be converted to NeuroML and PyNN
Developer Profile
openworm
Discovered public repositories for openworm in the GitHub catalog.
openworm/org.geppetto.maven
Maven repository for Geppetto
openworm/org.geppetto.recording
Python project allowing to create a recording for Geppetto
openworm/owmeta
Unified, simple data access python library for data & facts about C. elegans anatomy
openworm/org.geppetto.docs
Repository to host Geppetto documentation
openworm/open-worm-analysis-toolbox
A testing pipeline that allows us to run a behavioural phenotyping of our virtual worm running the same test statistics the Schafer Lab used on their worm data.
openworm/Blender2NeuroML
Conversion script to bring neuron models created in Blender into NeuroML format
openworm/openworm_docs
Documentation for OpenWorm, i.e. docs.openworm.org
openworm/bionet
Artificial biological neural network
openworm/org.geppetto.samples
Sample simulations for Geppetto
openworm/SegWorm
SegWorm is Matlab code from Dr. Eviatar Yemini built as part of the WormBehavior database (http://wormbehavior.mrc-lmb.cam.ac.uk/)
openworm/org.geppetto.templatebundle
Public repository.
openworm/org.geppetto.testbackend
Public repository.
openworm/sibernetic_config_gen
Generates starting scene configuration for the Sibernetic simulation engine
openworm/openwormbrowser-ios
OpenWorm Browser for iOS, based on the open-3d-viewer, which was based on Google Body Browser
openworm/org.geppetto.simulator.jlems
jLEMS based simulator for Geppetto
openworm/OpenWorm
Repository for the main Dockerfile with the OpenWorm software stack and project-wide issues
openworm/org.geppetto.simulator.sph
SPH Simulator bundle for Geppetto
openworm/org.geppetto.simulation
Generic simulation bundle for Geppetto
openworm/HeuristicWorm
Public repository.
openworm/sibernetic
This is a C++/OpenCL implementation of the PCISPH algorithm supplemented with a set of biomechanics related features applied to C. elegans locomotion
openworm/org.geppetto.frontend
Geppetto Java frontend bundle
openworm/muscle_model
Model of C elegans body wall muscle based on Boyle & Cohen 2008
openworm/CyberElegans
Neuromechanical model of C. Elegans
openworm/CElegansNeuroML
NeuroML based C elegans model, contained in a neuroConstruct project, as well as c302
openworm/org.geppetto
Geppetto is an open-source platform to build web-based applications to visualize and simulate neuroscience data and models.
openworm/openworm.github.io
OpenWorm main website
openworm/org.geppetto.model.neuroml
NeuroML Model Bundle for Geppetto
openworm/org.geppetto.sibernetic
PCI SPH Model Bundle for Geppetto
openworm/org.geppetto.solver.sph
PCI SPH Solver bundle for Geppetto
openworm/org.geppetto.core
Geppetto core bundle
openworm/wormbrowser
The Worm Browser -- a 3D browser of the cellular anatomy of the c. elegans