oklasoft/RepeatSoaker
a simple method to eliminate low-complexity short reads
Developer Profile
oklasoft
Discovered public repositories for oklasoft in the GitHub catalog.
oklasoft/BioTK
Python toolkit for differential expression, text mining, and genomic interval analysis
oklasoft/print_ngs_label
Quick Go app to print label for NGS lab
oklasoft/ComplexityByStartPosition
Creates a rarefaction curve to measure complexity in RNA Seq data using start position
oklasoft/conifer-tools
CoNIFER Tools - Tools for improving call generation, annotation and filtering. Used in conjuction with CoNIFER (Copy Number Inference From Exome Reads)
oklasoft/preferential_ld_scripts
Public repository.
oklasoft/phip-stat
Analysis tools for PhIP-seq experiments
oklasoft/scatter_plots_from_final_report
Small script to wrap work of making basic XY plots of illumina final genotyping report
oklasoft/random_sam
Quick one off to play with some MapReduce to get some random alignments from some SAMs
oklasoft/ngs_scripts
Misc scripts for running some NGS analysis
oklasoft/b-tangs
Binning Trimmer of Artifacts in Next Gen Sequence - Clean out possible PCR artifacts by searching for like sequence reads via some map reduce
oklasoft/verhoeff
Pure-Ruby implementation of the Verhoeff checksum algorithm.