nhoffman/deltas
Code and data for delta check simulation paper
Developer Profile
nhoffman
Discovered public repositories for nhoffman in the GitHub catalog.
nhoffman/pplacer
Phylogenetic placement and downstream analysis
nhoffman/scons_template
scons template for reproducible research
nhoffman/org-export
batch export of org-mode files from the command line
nhoffman/deenurp
De-novo selection of reference sequences
nhoffman/blog
(yet another) org-mode blogging framework
nhoffman/bioy
Tools for NGS sequence analysis and bacterial classification
nhoffman/ungapatchka
A python project template with bells and whistles
nhoffman/opiates
Automated QA for a clinical LC/MS urine opaites assay
nhoffman/seqlabd
Daemon for the clinical sequencing lab at UWMC
nhoffman/csvkit
A suite of utilities for converting to and working with CSV, the king of tabular file formats.
nhoffman/mypy
Configuration for my python environment
nhoffman/nestly
Make and use nested directory trees corresponding to combinatorial choices of parameters
nhoffman/alnvu
Reformat and condense multiple sequence alignments to highlight variability
nhoffman/.emacs.d
My emacs configuration
nhoffman/deduplicate
Remove duplicates from collections of biological sequences
nhoffman/pymenu
Provides a simple, interactive text-based user interface
nhoffman/Seq
(abandoned) python utilities for manipulation of biological sequences
nhoffman/bioscons
Extends the scons build tool for reproducible workflows in bioinformatics.
nhoffman/unittools
Lightweight utility for running python unit tests