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CytoDiv is a python script which will calculate the cytometric diversity from flow cytometry data. This is an extended method based on Li (1998), which incorporates more variables from the cytogram to better characterize diversity in picophytoplankton.
cytoDiv is a R package that calculates ecological diversity indices for a microbial community based on its bio-optical properties measured at the single cell level by flow cytometry. The indices express the organization and structure of a community, its richness in physiological and genetic variations. The equations used to calculate the indices are described in Li, W. 1997 Limnology & Oceanography 42, 874:880
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