ncbo/bioportal_mappings
A project to generate ontology mappings for BioPortal
Developer Profile
ncbo
Discovered public repositories for ncbo in the GitHub catalog.
ncbo/ncbo_resolver
A small library for resolving legacy NCBO ids to new ones
ncbo/faraday-http-cache
a faraday middleware that respects HTTP cache
ncbo/ontologies_api_ruby_client
A Ruby client for accessing NCBO's hypermedia api
ncbo/ncbo_cron
Jobs that run on a regular basis in the NCBO infrastructure
ncbo/sparql-client
SPARQL client for Ruby.
ncbo/ncbo_annotator
To automatically process a piece of data text to annotate it with relevant ontology concepts and return the annotations.
ncbo/ncbo_rest_sample_code
Sample code that demonstrates the use of the NCBO REST services
ncbo/ncbo_migration
Scripts for migrating data from older NCBO systems to newer ones
ncbo/ncbo_api_benchmark
A set scripts to create logs of calls that can be run in Jmeter. Only compatible with the new infrastructure to be released in 2013.
ncbo/ontologies_linked_data
Models and serializers for ontologies and related artifacts backed by 4store
ncbo/owlapi_wrapper
A command line utility that wraps the Java OWL-API to parse RDFS, OWL and OBO ontologies.
ncbo/ontologies_api
Hypermedia API for NCBO's ontology-related projects
ncbo/goo
Graph Oriented Objects (GOO) for Ruby. A RDF/SPARQL based ORM.
ncbo/sparql_http
SPARQL_HTTP is a SPARQL HTTP Client for Ruby. It is developed together with the Goo library but it hash been designed as an standalone component that can be used separately.
ncbo/4store
4store for BioPortal
ncbo/mc_sinatra
MC Sinatra is a skeleton Sinatra application and bootstrap/runtime environment that allows for the use of models, controllers, and helpers for creating simple, easy-to-understand web APIs.
ncbo/healthdata_metadata_challenge
Public repository.
ncbo/prototype_bioportal_rest_rails
This is a prototype BioPortal web service using rails-api as the framework
ncbo/bioportal_web_ui
A Rails application for biological ontologies
ncbo/resource_index_ruby_client
The NCBO Resource Index Gem is a Ruby client for NCBO's Rsource Index Web service
ncbo/hcomp_ontology_evaluation
Source code for creating and managing Mechanical Turk tasks for ontology evaluation via human computation
ncbo/bioportal-sparql-proxy
This is a django app that acts as a proxy for BioPortal's public triple store. It uses a modified version of the SNORQL browser to help the navigation across graphs and codemirror for syntax highlighting.
ncbo/umls2rdf
These python scripts connect to the Unified Medical Language System (UMLS) database and translate the ontologies into RDF/OWL files. This is part of the BioPortal project.
ncbo/ncbo_annotator_ruby_client
The NCBO Annotator Gem is a Ruby client for NCBO's Annotator Web service
ncbo/sparql-code-examples
Java, Perl, Python, Javascript, Ruby, etc. examples to query alphasparql.bioontology.org