naturalis/orchid-presentation
LaTeX slides for nbclassify
Developer Profile
naturalis
Discovered public repositories for naturalis in the GitHub catalog.
naturalis/mixed-reads-assembly-Erycina
Config files and scripts for assembly of mixed short (Illumina) and long (PacBio) reads
naturalis/Extract_Exons
Bash / python scripts for extracting exons from genomic sequences
naturalis/geogenodist
Data and scripts for the study of global trends in genetic distance by geographic distance.
naturalis/tolomatic-java
Port of MapReduce pruner to Java/Hadoop
naturalis/imgpheno
Image feature extraction in Python
naturalis/Find_SNPs
Compare two sets of mapping assemblies and return a list of SNPs (or InDels) that can distinguish the two sets.
naturalis/ai-fann-evolving
Framework to evolve optimal neural networks
naturalis/algorithm-genetic-diploid
Extensible implementation of a diploid genetic algorithm
naturalis/biovel-nbc
Naturalis implementations of BioVeL services.
naturalis/supersmart
Self-Updating Platform for the Estimation of Rates of Speciation, Migration And Relationships of Taxa
naturalis/Split_on_Primer
Split a FASTQ or FASTA file into sub files based on the primers used.
naturalis/de-novo-assembly
Contains shell scripts with example usage of NGS assembly tools for mid-size (insect) genomes.
naturalis/nepenthes-3dpca
Pipeline for performing principal component analysis of 3D scans of Nepenthes pitchers
naturalis/arangs
Automated and Reproducible Analysis of Next Generation Sequencing
naturalis/wgs2ncbi
Toolkit for preparing genomes for submission to NCBI
naturalis/tomatogenome
Project directory for the analysis of ancient tomato DNA
naturalis/monophylizer
A web tool to assess monophyly in trees as produced by BOLD systems
naturalis/FlorML
Public repository.
naturalis/Split_sequence
Split a sequence file into sub files based on the tags or primers used
naturalis/fastq-simple-tools
Simple utility scripts for operating on FASTQ files
naturalis/mapDamage
mapDamage: testing for damage patterns in ancient DNA sequences
naturalis/ngs-workflows
Source code, data and documentation to demonstrate automation in NGS data analysis
naturalis/HTS-barcode-checker
Pipeline for BLAST analysis of high-throughput DNA sequencing data.
naturalis/brahms-digi-webapp
Simple pipeline to join BRAHMS CSV records with image analysis
naturalis/cobra
Public repository.
naturalis/orchids
Scripts and data to analyze and visualize duplication and divergence of the MADS box genes in Orchids
naturalis/sff2fastq
extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output
naturalis/Cluster-pipeline
454 sequence clustering and identification
naturalis/bio-phylo
Phyloinformatic analysis using Perl