mwvaughn/bwa-0.7.10
Reference bwa aln implementation for Agave API
Developer Profile
mwvaughn
Discovered public repositories for mwvaughn in the GitHub catalog.
mwvaughn/collabopedia
Public repository.
mwvaughn/iPlant-BWA-MEM-Parallel
A wrapper for increasing scaling of BWA.
mwvaughn/workshop_tutorial_api
Tutorial for learning the basics of developing, testing, and deploying three types of AIP web services
mwvaughn/atted_webservices
Illustrative web service for ATTED II coexpression web service
mwvaughn/data_api_examples
Examples for the AIP Workshop API tutorial session
mwvaughn/polymorph_hdr
More sophisticated ADAMA service to interact with the Weigel POLYMORPH HDR service
mwvaughn/thalemineOntologyToLocus
Demonstration of using Thalemine templates as a basis for building a simple web service
mwvaughn/expressologsByLocus
Queries the BAR expressologs service and transforms to an AIP locus_relationships type
mwvaughn/queryThalemineAsJbrowseIndex
Example map_filter API for Araport ADAMA
mwvaughn/scripts
Early utility scripts for the Araport project
mwvaughn/maker_pylauncher
Public repository.
mwvaughn/tophat-wrapper
TopHat Wrapper for iPlant DE, originally authored by Sheldon McKay
mwvaughn/gensel-4.55-de
Public repository.
mwvaughn/fastlmm-plot
Create dynamic plots from FastLMM output
mwvaughn/kidl-compiler
Clone of Kbase Type Compiler http://kbase.science.energy.gov/dev-tools/20130412-kidl-compiler.tar.gz
mwvaughn/agave-kbase
Various in support of deploying Kbase apps in the iPlant Agave API
mwvaughn/interproscan-1.00
Clone of EBI interproscan command line client for iPlant DE
mwvaughn/blast-2.2.26
Agave implementation of parallel BLAST
mwvaughn/tacc-rpm-build-includes
Includes for TACC and other systems
mwvaughn/iplant-de-charts
Examples of charts in DE leveraging Google APIs
mwvaughn/goanna-connect
Adapter script to integrate AgBase GoAnna resource with iPlant DE
mwvaughn/agave-admin-tools
Administrative tools for the TACC Agave API
mwvaughn/bwa-0.59
Public repository.
mwvaughn/iget_cached
Wrapper script for iRODS iget that provides local caching of files to enhance data locality
mwvaughn/bam2counts-1.00
Public repository.
mwvaughn/metaphlan
Agave API implementation of metaphlan
mwvaughn/genotype-1.00
GATK-based animal genotyping pipeline implemented in iPlant API
mwvaughn/tophat-1.3.1
Agave API implementation of tophat-1.3.1
mwvaughn/macs
MACS app for iPlant Foundation API
mwvaughn/springer-ase
Allele-specific expression pipeline developed in collaboration with Springer lab (UMN)
mwvaughn/edgeR-iplant-de
Example of using the edgeR BioC library + R as an iPlant DE component
mwvaughn/iAnimal
Various iAnimal-associated projects
mwvaughn/iplant-de-verdant-rnaseq
shim scripts and exports of the JSON descriptions for RNAseq apps for the iPlant Verdant DE
mwvaughn/Foundation_API_apps
Example applications for iPlant Foundation API
mwvaughn/iPlantFoundationAPIAdapter
Public repository.