mscook/BEB-recipes
Recipes for Banzai-EasyBuild
Developer Profile
mscook
Discovered public repositories for mscook in the GitHub catalog.
mscook/Banzai-EasyBuild
A no fuss next-generation sequencing analysis stack bootstrapping tool
mscook/BioSubmit
NGS submission for Humans
mscook/CONTIGuator-tools
We're increasingly using CONTIGuator in our work! Here are some tools/wrappers. Eventually we should look at getting these incorporated into the CONTIGuator core.
mscook/Archiver
Archiving of NGS data
mscook/BanzaiDB
BanzaiDB is a tool for pairing Microbial Genomics Next Generation Sequencing (NGS) analysis with a NoSQL database.
mscook/seqhandler
Public repository.
mscook/Voting-Numbers-Data
For a given seat predict voter turnout at a polling stations
mscook/Banzai-MicrobialGenomics-Pipeline
Banzai is a Microbial Genomics Next Generation Sequencing (NGS) Pipeline Tool developed within Dr Scott Beatson’s Group at the University of Queensland
mscook/nway2aln
Given a Nesoni n-way SNP comparison file produce a mfa alignment file
mscook/MafIO
This module if for reading the MAF file
mscook/to-gff
Convert .gbk or .embl to .gff (and optionally .fa) (required for QUAST)
mscook/image-compare
Compare multiple images reporting similarity
mscook/SeqFindR_nesoni
Generate mapping consensus inputs for SeqFindR using nesoni
mscook/B2L
B2L allelic variation
mscook/B2LScrape
Got an antibiotic resistance problem? Fetch Beta-Lactamase sequences from the NCBI
mscook/rQer
Ensure uncalled bases ('N') have a quality score of 2
mscook/WSTSFU
Convert M$ Excel based NGS worksheets into a useful format (JSON)
mscook/nway-pandas
Manipulation of the Nesoni nway with pandas
mscook/coders-club
Coders Club is a monthly meeting in the Beatson Group aiming to provide better software development practices
mscook/nway-dbify
Get Nesoni nway results into a database and provide useful query functions
mscook/uPEP
A tool to identify upstream ORFs that have the potential to encode bioactive peptides
mscook/uPEP-helpers
uPEP-helpers: a core fabfile for managing uPEP databases
mscook/mscook.github.io
Pelican based blog
mscook/SeqFindR
A tool to easily create informative genomic feature plots
mscook/pyParaTools
pyParaTools - fitting paramagnetic observables to theoretical models