mpharrigan/bibcheck
Bibtex parser in python
Developer Profile
mpharrigan
Discovered public repositories for mpharrigan in the GitHub catalog.
mpharrigan/mattools
Little helper functions to make life easier
mpharrigan/nxweight
Draw directed graphs with edge weights
mpharrigan/klearn
algorithms for using kernel methods for learning
mpharrigan/cysingmodel
Modified Ising model for solvent metric
mpharrigan/pdbfixer
PDBFixer fixes problems in PDB files
mpharrigan/mcmd
Object oriented wrapper for argparse
mpharrigan/openmm
OpenMM is a toolkit for molecular simulation using high performance GPU code.
mpharrigan/wetmsm
Investigate water in MD trajectories
mpharrigan/restimate
Rate estimation
mpharrigan/vim-pathogen
pathogen.vim: manage your runtimepath
mpharrigan/mixtape
Hidden Markov models for Biomolecular Dynamics
mpharrigan/mdtraj
Molecular Dynamics Trajectory and File IO
mpharrigan/quant-accel
Quantitative analysis of msmaccelerator
mpharrigan/msmaccelerator2
Adaptive Sampling Markov State Model Driven Molecular Dynamics
mpharrigan/tungsten
Public repository.
mpharrigan/quant-accel-old
Quantitative analysis of msmaccelerator on the muller potential
mpharrigan/msm-toys
Support for toy models
mpharrigan/openmm-cmd
OpenMM Command Line Application
mpharrigan/fuzzy-clustering
Testing out fuzzy clustering on the muller potential
mpharrigan/msmaccelerator2.villin
Benchmarking msmaccelerator on villin mutant
mpharrigan/msmaccelerator-toy
MSMAccelerator Toy System
mpharrigan/msmbuilder
Extensible software for building Markov State Models for Biomolecular Conformational Dynamics https://msmbuilder.readthedocs.org
mpharrigan/KDML
Kinetically Discriminatory Metric Learning -- a plugin for MSMBuilder