matsengrp/prank-msa
Public repository.
Developer Profile
matsengrp
Discovered public repositories for matsengrp in the GitHub catalog.
matsengrp/indelible
A clone if Indelible biological sequence simulator from http://abacus.gene.ucl.ac.uk/software/indelible/
matsengrp/slackbot-python
A Slack.com bot in Python integrated with Amazon SQS
matsengrp/dockerfiles
Public repository.
matsengrp/relay
Bare-bones continuous integration using Docker Hub and Slack.
matsengrp/journal-club
Material for journal club.
matsengrp/indel-seq-gen
Molecular evolution simulation with dependencies and end-point conditioned inference
matsengrp/Visualization
Public repository.
matsengrp/tangle
Code for working with tanglegrams.
matsengrp/curvature
Ricci-Ollivier curvature of SPR and related graphs.
matsengrp/gricci
SAGE implementation of Ricci-Ollivier curvature on graphs.
matsengrp/alnclst
A simple UCLUST-like clustering algorithm for pre-aligned sequences with built in recentering
matsengrp/betarat
Bayesian analysis of contingency tables as the ratio of two binomially distributed random variables
matsengrp/lcfit
A specialized surrogate function for phylogenetic likelihoods.
matsengrp/hyperfreq
Bayesian tool for APOBEC hypermutation analysis
matsengrp/smctc
Our fork of Adam M. Johansen's Sequential Monte Carlo Template Class