marcelTBI/RateGraph
Reduces the state space from BHGbuilder output file and create a rate matrix for treekin
Developer Profile
marcelTBI
Discovered public repositories for marcelTBI in the GitHub catalog.
marcelTBI/compHeights
comparator tool for energy heights from barriers and DSUeval
marcelTBI/BHGbuilder
Gets local minima list and tries to compute their saddles, landmap, and LM to LM energy barriers
marcelTBI/graphSim
Simulation and visualisation tool for RNA sequences
marcelTBI/RNAlandmap
Generates landmap(landmark) from RNAsubopt -e output
marcelTBI/comparator
compare output files from RNAlocmin and barriers
marcelTBI/RNAlocmin
Finds local minima of RNA + constructs barrier tree
marcelTBI/treekin
Numerically integrate a Markov process -- especially for predicting RNA folding kinetics