marbl/MHAP
MinHash Alignment Process (MHAP, pronounced MAP): locality-sensitive hashing to detect long-read overlaps and utilities
Developer Profile
marbl
Discovered public repositories for marbl in the GitHub catalog.
marbl/parsnp
Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can be both draft assemblies and finished genomes, and output includes variant (SNP) calls, core genome phylogeny and multi-alignments. Parsnp leverages contextual information provided by multi-alignments surrounding SNP sites for filtration/cleaning, in addition to existing tools for recombination detection/filtration and phylogenetic reconstruction.
marbl/harvest
Public repository.
marbl/harvest-tools
Public repository.
marbl/seminars
Seminar announcements
marbl/gingr
Public repository.
marbl/metAMOS
A metagenomic and isolate assembly and analysis pipeline built with AMOS