macmanes/pero_transcriptome
Public repository.
Developer Profile
macmanes
Discovered public repositories for macmanes in the GitHub catalog.
macmanes/blasr
This is an unsupported version of the PacBio blasr aligner. It contains my (very beta) optimizations and new functionality. It may disappear at any time.
macmanes/MooreDDD
Moore DDD Pre-application 2014
macmanes/P20-COBRE
2014 COBRE
macmanes/kmer_paper
Public repository.
macmanes/khmer-protocols
Public repository.
macmanes/evaluate
Evaluate transcriptome assemblies
macmanes/shell
shell
macmanes/trimming_paper
files for Trimming paper
macmanes/social-genomics
macmanes, geraghty, woodruff, lacey
macmanes/error_correction
PeerJ Error Correction Paper
macmanes/DWGSIM
Whole Genome Simulator for Next-Generation Sequencing
macmanes/hts-code
General repo for BiGCB code relating to processing sequence data
macmanes/khmer
in-memory k-mer counting
macmanes/general_code
general_code
macmanes/trinityrnaseq
Trinity
macmanes/sga
experimental de novo sequence assembler using string graphs
macmanes/velvet
Short read de novo assembler using de Bruijn graphs