lpantano/idr
IDR
Developer Profile
lpantano
Discovered public repositories for lpantano in the GitHub catalog.
lpantano/tDRmapper
Public repository.
lpantano/so-simple-theme
A simple and clean responsive Jekyll theme for words and photos.
lpantano/mirdeep2_core
Main core scripts for novel mirna discovery from bam files
lpantano/recipes
Conda recipes for the bioconda channel.
lpantano/cambridge-bio-developer-ladies
material we talk in our meet-ups
lpantano/bosc2015
Content from BOSC2015 unconference sessions on building successful open source bioinformatics communities
lpantano/sql.js
SQLite compiled to JavaScript through Emscripten
lpantano/prelude
Prelude is an enhanced Emacs 24 distribution that should make your experience with Emacs both more pleasant and more powerful.
lpantano/seqclusterViz
visualization of seqcluster output, try at:
lpantano/fadapa
FAstqc DAta PArser - A minimal parser to parse FastQC output data.
lpantano/bcbio.coverage
utils functions for exome coverage plots as quality controls
lpantano/ASMfinder
find allele specific hemi-methylation sites from rrbs data
lpantano/sydSeq
R package - sydSeq - various functions for gene expression analysis
lpantano/coral
Classification of RNAs by Analysis of Length
lpantano/mypubs
creation of methods with the purpose of tools comparison
lpantano/vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
lpantano/bcbio.variation.recall
Parallel merging, squaring off and ensemble calling for genomic variants
lpantano/incubator
not fully-hatched projects
lpantano/pheatmap
Pretty heatmaps
lpantano/pickleshare
File system based database that uses python pickles
lpantano/homebrew-science
Scientific formulae for the Homebrew package manager
lpantano/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
lpantano/bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
lpantano/pcbc_c4_analysis
Analysis of C4 data
lpantano/RUVSeq
Repository linked to devel version of Bioconductor RUVSeq package
lpantano/lpantanoold.github.io
A web application to build your blog on GitHub
lpantano/ich-wrapper
easily use ipython-cluster-helper package to create custom framework using bcbio function
lpantano/seqcluster-helper
Help for the installation and configuration of seqcluster tool
lpantano/ipython-cluster-helper
Tool to easily start up an IPython cluster on different schedulers.
lpantano/papersDB
connect to pubmed to get main information and save in a db to be analyzed after that
lpantano/hsinv379
data related to paper
lpantano/sra
python package to download and convert rsa files
lpantano/scripts_hsph
some useful scripts for projects
lpantano/notes.statistics
my notes about good resources I found over internet
lpantano/schizomic
sites to place last publications, studies about schizophrenia from psychology to psychiatry. It starts as personal site but it is more than welcome any pull request.
lpantano/myRfunctions
some functions that I use to increase productivity and reproducibility
lpantano/homebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
lpantano/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
lpantano/bcbio.rnaseq
Automatic RNA-seq DE caller benchmarking
lpantano/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
lpantano/seqcluster
small RNA analysis from NGS data
lpantano/myconfig
some personal files to work in cloud
lpantano/isomiRs
analyze isomiRs from seqbuster tool
lpantano/bcbio-nextgen
Validated, scalable, community developed variant calling and RNA-seq analysis
lpantano/IdeGen
detect fusion genes in inverted regions
lpantano/DEGreport
Create a cromphensive report of DEG list coming from any analysis of RNAseq data
lpantano/shiny
some shiny apps
lpantano/CHBUtils
Utility functions in R
lpantano/java_seqbuster
java src for seqbuster scripts