lindenb/java2graph
Export java model/UML of classes as a graph (graphiz dot, gexf/gephi ) First described in http://plindenbaum.blogspot.fr/2008/10/javadoc-is-not-enough-java2dia.html
Developer Profile
lindenb
Discovered public repositories for lindenb in the GitHub catalog.
lindenb/verticalize
Simple tool to verticalize text delimited files.
lindenb/makefile2graph
Creates a graph of dependencies from GNU-Make; Output is a graphiz-dot file or a Gexf-XML file.
lindenb/ngs-ontology
Ontology describing NGS experiments
lindenb/htsjni
Native java bindings for htseq
lindenb/quotes
RDF/XML quotes
lindenb/gimplugins
C plugins for GIMP
lindenb/htsjdk
A Java API for high-throughput sequencing data (HTS) formats.
lindenb/bedtools2
A powerful toolset for genome arithmetic.
lindenb/mod_bio
apache2 modules for bioinformatics.
lindenb/localgenewiki
Local Gene Wiki
lindenb/jsonx
another json java api
lindenb/rdfserver
RDF server
lindenb/droolsworkflow
Bioinformatics workflow using jboss drools. Idea from Ekrame Jacobi / Genoscope / Evry
lindenb/asktheeditor
Ask the Editor
lindenb/cloneit
github repo for Bioinformatics. 1998 Jun;14(5):465-6. CloneIt: finding cloning strategies, in-frame deletions and frameshifts.
lindenb/rdfeditor
Swing-based RDF editor using the Apache Jena library
lindenb/genomehub
Genome Hub
lindenb/hershey
Tools for the Hershey Vector Font
lindenb/jsontribble
Tribble codec for JSON
lindenb/bioman
manual pages for the bioinformatician
lindenb/jvarkit
Java utilities for Bioinformatics
lindenb/ngsproject
java server for NGS.
lindenb/bwa
Burrow-Wheeler Aligner
lindenb/jsvelocity
Processing structured data (json,yaml, tables, ...) with apache velocity
lindenb/fastorm
ORM code generator
lindenb/jbwa
Java Bindings (JNI) for bwa
lindenb/jenaorm
Read-Only Object-Relational-Mapping for Apache-Jena
lindenb/vizbam
BAM visualization
lindenb/bamjs
Javascript and BAM
lindenb/dataindexer
Because I'm living in a read-only world.
lindenb/bdbutils
Utilities for berkeleyDB
lindenb/tabix
Public repository.
lindenb/samtools
Fork of samtools
lindenb/alligator
Web services for bioinformatics
lindenb/courses
Courses
lindenb/xsd-sandbox
XML Schema / JAXB sandbox
lindenb/xml4ngs
XML transformations for Next Generation Sequencing
lindenb/broadgsa.gatk
GATK Official Release Repository
lindenb/jsonkit
json tools
lindenb/keyvalueds
A C++ cmd-line based key-value datastore
lindenb/bioinformatics-career-survey
Results of the bioinformatics career survey 2008
lindenb/bionode
node.js for bioinformatics . Contains a REST server for the UCSC
lindenb/samtools-utilities
Utilities for Samtools ( http://samtools.sourceforge.net/ )
lindenb/data
data, only data
lindenb/xslt-sandbox
My xslt sandbox
lindenb/jsandbox
My java Sandbox
lindenb/mw4bio
MediaWiki extenstions for Bioinformatics
lindenb/ccsandbox
some C++ programs
lindenb/lindenb.github.com
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