lbergelson/bamsurgeon
tools for adding mutations to existing .bam files, used for testing mutation callers
Developer Profile
lbergelson
Discovered public repositories for lbergelson in the GitHub catalog.
lbergelson/optparse
R package proving commandline optional argument parser
lbergelson/practice
Public repository.
lbergelson/misc
miscellaneous scripts
lbergelson/PanelOfNormalsFilter
Filtering a somatic variant file against a panel of normal variants.
lbergelson/variant-to-igv
A tool which takes a variant file and bams, and creates igv screenshots of each of the variants.
lbergelson/VCFcomparator
Tool for comparing mutation calls in VCF format
lbergelson/git-aware-prompt
Display current Git branch name in your terminal prompt when in a Git working directory.
lbergelson/somatic-benchmark
Tools for comparing somatic variant calling tools.
lbergelson/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
lbergelson/mutect
MuTect -- Accurate and sensitive cancer mutation detection
lbergelson/git
Git Source Code Mirror - This is a publish-only repository and all pull requests are ignored. Please follow Documentation/SubmittingPatches procedure for any of your improvements.