kdm9/gi-to-tax
Finds taxonomic information for a given set of genbank identifiers, using the NCBI taxonomy database.
Developer Profile
kdm9
Discovered public repositories for kdm9 in the GitHub catalog.
kdm9/lab-notebook
Writeups of various things
kdm9/seqqs
seqqs is a C program/library for gathering quality statistics from sequencing data
kdm9/knives
A pipelined quality control script that utilises the UC Davis Biocore's sabre, sickle, scythe and seqqs.
kdm9/gbsqc
Demo Genotyping-by-Sequencing qc pipeline (KM version)
kdm9/sabre
Public repository.
kdm9/timestreamlib
A python library to manipulate timestreams
kdm9/spc-timestreamui
A web visualisation of timestreams of the SpectralPhenoClimatron
kdm9/sickle
Windowed Adaptive Trimming for fastq files using quality
kdm9/wicd-templates
Encryption templates for wicd
kdm9/Apprentice-coder
Musings for us rookie coders that sometimes forget where the terminal is
kdm9/tableTK
Process tabular data quickly
kdm9/podd-redesign
The redesigned PODD
kdm9/kdm-tor
My UNOFFICIAL dev branch of tor. See torproject.org for the real thing
kdm9/libkdm
Header-only C Library which makes life easier
kdm9/biopipes
Python module to make writing Ipython analysis workflows easier
kdm9/analyses
IPython notebooks for various projects
kdm9/superpipes
An improved version of stdlib's `pipes` module
kdm9/klib
A standalone and lightweight C library
kdm9/pipedream
Useful stuff for building distributed pipelines and data workflows
kdm9/fastDBarcode
DEPRECATED: Use AXE, at
kdm9/traitcapture-bin
Programs, scripts, etc. forming part of the TraitCapture Genotype-Phenotype-Environment analysis suite
kdm9/texlive-local
Dummy package to allow texlive to be installed locally
kdm9/hons-thesis-stats
Some Rmd/Rnw files to analyse some datasets from my thesis. Pilfer methods at will, data is not for the taking.
kdm9/hons-finalpresentation
Final presentation of my 2013 Honours project
kdm9/scripts
Misc scripts for sysadmin-ish activities
kdm9/libqes
A small C library, with a bioinformatic focus. Optimised for speed and a clean API
kdm9/htslib
C library for high-throughput sequencing data formats. This is a fork of the official repository.
kdm9/rosalind
problems from rosalind.info
kdm9/seqtk
Toolkit for processing sequences in FASTA/Q formats
kdm9/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
kdm9/libngs
The Nifty GNU Sequence Library
kdm9/scythe
A 3'-end adapter contaminant trimmer
kdm9/bcbb
Incubator for useful bioinformatics code, primarily in Python and R
kdm9/pyMusicOrganiser
pymo organises your music based on media tags
kdm9/RNAseqPipeline
Public repository.
kdm9/templates
Template and example files used in other projects, e.g. Makefiles, .gitignores etc
kdm9/hons-thesis
Honours thesis for Kevin Murray's 2013 honours project.
kdm9/SpectralPhenoClimatron-control
Control software for the conviron growth chambers and heliospecta LED arrays
kdm9/samtools
Public repository.
kdm9/pycogent
PyCogent: Official repository for software and unit tests
kdm9/bioscripts
A Collection of Bioinformatic Scripts
kdm9/cutadapt
cutadapt removes adapter sequences from DNA sequencing reads
kdm9/hons-labnotebook
Honours Lab Notebook
kdm9/seedbank
Open Source Plant Accession Collection Database
kdm9/traitcapture
Public repository.
kdm9/multiparthandler
Updated version of MultipartPostHandler
kdm9/biopython
Official git repository for Biopython (converted from CVS)
kdm9/DegradomeAnalyseR
A post-processing analysis toolkit for integrative degradomics
kdm9/degpy
Public repository.