jpearl01/calculate_divergence
Calculate the pairwise divergence of a sliding window over an MSA
Developer Profile
jpearl01
Discovered public repositories for jpearl01 in the GitHub catalog.
jpearl01/get_gene_list_dna
Node app to download the dna sequence of a list of gene names
jpearl01/family_recipes
A RoR site to store our delightful family recipes.
jpearl01/dot_files
My config files. Just the way I like them. Not how you like them. Unless you like them the way I like them.
jpearl01/virulence_retrieval
Download ncbi sequences based on a listing of virulence gene names/ec#s
jpearl01/genomics_tools
Tools for calculating various genomics data
jpearl01/extract_core_from_mauve_align
Extract a concatenated "core" string of dna from a multiple sequence alignment out of Mauve
jpearl01/prepare_supragenome_project
Take a list of genbank files, and create the inputs required for a normal supragenome MSA with fasta36
jpearl01/xmas_drawing
My program to randomly draw names for christmas gift exchange
jpearl01/16s_analysis
A ruby implementation to digest both 454 amplicon outputs by MID, plus Ibis data
jpearl01/16s_classification
Takes output from the rdp (ribosomal database project) program and reports in excel sheets bacteria numbers from a sample by level of phylogenetic classification.
jpearl01/bac_classification
A ruby pipeline for the classification of 16s amplicon sequencing.
jpearl01/rrp_analysis
An analysis suite for the rrp project
jpearl01/mouse_SNP_filtering
Filter the mouse variant calls to find intersections
jpearl01/cluster_analysis
Bioruby program to analyze gene cluster (family) distributions in multi-genome comparisons
jpearl01/setup_env
Setup a new fedora install
jpearl01/increase_genomes_iteratively
Project to create a histogram showing the changes to the core genome size as new genomes are included
jpearl01/my_clustergenes
The latest clustgenes programs
jpearl01/dominion_database
Database to track the dominion games I've played
jpearl01/try_git
Public repository.
jpearl01/genome_comparison
First attempt at my genome comparison website.
jpearl01/42_hihh_circos
Public repository.
jpearl01/rearrange_gbk_from_mauve
Program to rearrange a genbank file after the "move contigs" operation in mauve
jpearl01/genomics-database-test
a test website for the genomics website
jpearl01/sample_app1
Ruby on Rails Tutorial sample application
jpearl01/sample_app
Ruby On Rails Tutorial Sample application
jpearl01/demo_app
Ruby On Rails demo application
jpearl01/first_app
The first App for the Ruby on Rails Tutorial