joey711/ggplot2
An implementation of the Grammar of Graphics in R
Developer Profile
joey711
Discovered public repositories for joey711 in the GitHub catalog.
joey711/shiny-phyloseq
An interactive web application for demonstrating and using phyloseq.
joey711/MetaPathways
A modular pipeline for constructing Pathway/Genome Databases from environmental sequence information
joey711/RCyc
Bidirectional interface between SRI's Pathway Tools software and R
joey711/waste-not-supplemental
Supplemental Materials for the "Waste Not, Want Not..." Article in PLoS Computational Biology
joey711/phyloseq-extensions
Extensions for the phyloseq package for R
joey711/navasetal
R markdown supplementary files for navas et al
joey711/biom-format
The Biological Observation Matrix (BIOM) Format Project
joey711/phyloseq-article-2013
The complete source for reproducing our 2013 PLoS ONE article describing the phyloseq package
joey711/biom
Development version of the biom package for R
joey711/qiime.io
Experimental support for loading and interacting with QIIME files in R.
joey711/joey711.github.com
Official GitHub central page for joey711
joey711/phyloseq-demo
Extended demonstrations of the phyloseq package
joey711/Rmagic
Rmagic -- a cell magic for the python notebook using R code with python
joey711/ggplot2-tutorial
Quick introduction to ggplot2 (no knowledge of R assumed)
joey711/matR
Public repository.
joey711/ggdendro
Tools to extract dendrogram plot data for use with ggplot
joey711/gggraph
Make graph/network plots with the ggplot2 package for R
joey711/animate.phyloseq
Animation addon tool for phyloseq package
joey711/roxygen
Public repository.
joey711/phyloseq
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
joey711/testpkg
A dummy R package for testing aspects of R development