jmchilton/pico_galaxy
Galaxy tools and wrappers for sequence analysis
Developer Profile
jmchilton
Discovered public repositories for jmchilton in the GitHub catalog.
jmchilton/galaxy-downloads
Misc. Galaxy related downloads.
jmchilton/galaxy_blast
Galaxy wrappers for NCBI BLAST+ and related BLAST tools.
jmchilton/galaxy-dist
Public repository.
jmchilton/puppet-jmchilton
John Chilton's puppet repository powering jmchilton.net and related sites and servers.
jmchilton/SnpEffect
My local mirror of SVN repository for SnpEffect (http://svn.code.sf.net/p/snpeff/code/SnpEffect/trunk/).
jmchilton/galaxytools
Galaxy Tool wrappers
jmchilton/chaussette
Public repository.
jmchilton/lwr
Github mirror of https://bitbucket.org/jmchilton/lwr.
jmchilton/galaxy-bootstrap
A simple Java package for downloading and configuring Galaxy. Initial work is a framework to test blend4j.
jmchilton/clj-blend
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
jmchilton/biopython
Official git repository for Biopython (converted from CVS)
jmchilton/writing
Posters, etc...
jmchilton/puppet-python
Puppet module for installing and managing python, pip, virtualenvs and Gunicorn virtual hosts.
jmchilton/puppet-biocloudcentral
Puppet configuration for biocloudcentral.
jmchilton/protbiocloud
Documentation on using CloudBioLinux for Mass Spectrometry and Proteomic Analysis
jmchilton/cloudman
git repo tracking the Galaxy project's CloudMan mercurial repository at https://bitbucket.org/galaxy/cloudman
jmchilton/psm-eval
Python application and framework for reanalyzing peptide-spectrum-matches (PSMs).
jmchilton/pyyayaml
A Python library for parsing YAYAML.
jmchilton/puppet-lwr
A puppet module managing LWR (https://bitbucket.org/jmchilton/lwr/) servers.
jmchilton/europe2013
Public repository.
jmchilton/exon-exon-junction
Updates to the Putative Exon-Exon junction database creation code found here: http://www.zcni.zju.edu.cn/en/download.htm
jmchilton/puppet-tint
Puppet modules for the TINT project (https://github.com/jmchilton/TINT).
jmchilton/pymz5
A python library to access mz5 mass spectrometry data files
jmchilton/pymz5-failed-attempt
Failed attempt at creating project that builds on h5py code.
jmchilton/globus-cookbook
Cookbook for installing globus
jmchilton/puppet-tomcat
Puppet module for Apache Tomcat
jmchilton/puppet-module-template
Template puppet module to build new modules from.
jmchilton/h5py
HDF5 for Python -- The h5py package is a Pythonic interface to the HDF5 binary data format.
jmchilton/pepnovo
My local changes to PepNovo (http://proteomics.ucsd.edu/Software/PepNovo.html)
jmchilton/biocloudcentral-puppet
Puppet Config for Deploying biocloudcenral (https://github.com/chapmanb/biocloudcentral)
jmchilton/protvis
A fork proteomics-visualise https://bitbucket.org/Andrew_Brock/proteomics-visualise
jmchilton/lorikeet
A Javascript MS/MS spectrum viewer (fork of http://code.google.com/p/lorikeet)
jmchilton/jmchilton.net
Code powering jmchilton.net
jmchilton/galaxy-central
Deprecated repository GOTO https://github.com/galaxyproject/galaxy
jmchilton/prodbiocloud
Guide to building and deploying production Galaxy instances with CloudMan and CloudBioLinux
jmchilton/jgalaxy
A Java/Swing front-end to Galaxy (http://galaxyproject.org).
jmchilton/biocloudcentral
Easily launch CloudMan and CloudBioLinux clusters with no manual configuration
jmchilton/mzServer
My fork of mzServer (http://sourceforge.net/p/mzserver/home/mzServer/) updated to target the latest multiplierz changes and allow running under Wine on Linux.
jmchilton/proteomics-wine-env
The project lets you package up a Wine environment into a single shell script for distribution to other Linux instances or users.
jmchilton/peptide-shaker
My fork of peptide-shaker (http://code.google.com/p/peptide-shaker)
jmchilton/SuperHirn
Fork of SuperHirn with local changes to get it compiling under Ubuntu 12.04
jmchilton/cloudman_openstack_bootstrap
This project contains a set of scripts and config files I am using to configure CloudMan for MSI's private OpenStack cloud.
jmchilton/cloudbiolinux-deployer
This project is meant to be used to launch a VM, configured it via a CloudBioLinux flavor (with initial focus on Galaxy and CloudMan), and upload data to it. This project is the successor of the galaxy-vm-launcher.
jmchilton/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
jmchilton/distributed-collectl-parser
A distributed CollectL parsing system for use with msi-software-accounting project.
jmchilton/puppet-rvm
A puppet module for installing and using RVM (Ruby Version Manager)
jmchilton/puppet-postgresql
A Puppet module for managing postgres
jmchilton/vm-launcher-skeleton
An outline for a python project to get started with vm-launcher quickly.
jmchilton/vm-launcher-transfer-test
An small vm-launcher project to test file transfer component in isolation.