jdiez/vcfnp
Load numpy arrays from VCF (variant call file)
Developer Profile
jdiez
Discovered public repositories for jdiez in the GitHub catalog.
jdiez/simpsons-in-css
Simpsons characters in pure CSS
jdiez/ngsutils
Tools for next-generation sequencing analysis
jdiez/matplotlib
matplotlib: plotting with Python
jdiez/dgi-db
Rails frontend to The Genome Institute's drug gene interaction database.
jdiez/hts-specs
Specifications of SAM/BAM and related high-throughput sequencing file formats
jdiez/vcf_importer
VCF Importer: Converts a VCF file into a Variants GTable object
jdiez/tablefactory
Easily create HTML, spreadsheet, or PDF tables from common Python data sources
jdiez/django-rest-framework
Awesome web-browseable Web APIs.
jdiez/rubra
Infrastructure code to support DNA pipeline
jdiez/favr
Filtering and Annotation of Variants that are Rare
jdiez/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
jdiez/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
jdiez/seqtk
Toolkit for processing sequences in FASTA/Q formats
jdiez/illumina-utils
A library and collection of scripts to work with Illumina paired-end data (for CASAVA 1.7+ pipeline).
jdiez/rq
Simple job queues for Python
jdiez/PyVCF
A Variant Call Format reader for Python.
jdiez/gemini
a lightweight db framework for disease and population genetics.
jdiez/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
jdiez/VcfPythonUtils
python utilities to work with Variant Call Format files (VCF)
jdiez/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
jdiez/biopython
Official git repository for Biopython (converted from CVS)
jdiez/bcbb
Useful bioinformatics code, primarily in Python and R