icefoxx/UBD
FinalVersions
Developer Profile
icefoxx
Discovered public repositories for icefoxx in the GitHub catalog.
icefoxx/VertebrateResequencing
A code repository for the Vertebrate Resequencing Informatics group at the Sanger
icefoxx/resequencing_pipeline
Pipeline for processing resequencing data using Mosaik and GATK
icefoxx/was-resequence
Wasmannia resequence
icefoxx/resequencer2
Public repository.
icefoxx/genome_reseq_scripts
Public repository.
icefoxx/reseq-1
Public repository.
icefoxx/reseq
Resequencing pipeline
icefoxx/AIanalyzer
A collection of Perl and C/C++ programs I wrote for analyzing allelic imbalance sites in sequenced human transcriptome.
icefoxx/Kmer
Programs to perform kmer analysis (such as tetramers)
icefoxx/biocluster-modules
Modules for describing software environment on biocluster
icefoxx/BioUtils
Python scripts for miscellaneous bioinformatics stuff.
icefoxx/fingerpuppet
fingerpuppet is intended to be (I have grandiose visions) a complete RNA-Seq analysis package. It is based on Python, and uses GAMS and R as well. fingerpuppet takes the raw output of the alignment of RNA-Seq data in the form of BAM files and performs quantification and differential statistic analysis on the data.
icefoxx/python-codes-for-RNAseq
All tools that help me work with RNAseq data.
icefoxx/nussinov
Python implementation of Nussinov algorithm for RNA folding
icefoxx/gsinghal_python_src
Python Code, Machine Learning, Cancer Genomics, DNA/RNA Sequence Analysis
icefoxx/RNASeqTools
RNA-Seq toolkit written in python.
icefoxx/mg-pipeline
Metagenomics data munger - python implementation
icefoxx/python-bwa-wrapper
Script for calling bwa on gencode rna-seq data
icefoxx/NGS-pipeline
NGS pipeline based on the python module ruffus
icefoxx/backbonomist
Python pipeline to analyse conserved genome regions
icefoxx/basilisk
CASA data-reduction pipeline written in Python
icefoxx/fzsheffield
Creating a python pipeline to work with next generation snp data
icefoxx/bioinfo
bioinformatics scripts written in Python
icefoxx/bioinformatics_scripts
bioinformatics scripts written in python or R
icefoxx/CS295-Python-Bioinformatics
Winter 2012 course on python for bioinformatics.
icefoxx/methylmaps
Data analysis pipeline for the Methyl-MAPS method
icefoxx/py_mbl_sequencing_pipeline
py_mbl_sequencing_pipeline
icefoxx/rDnaTools
A series of tools and pipelines for working with 16S sequence generated with the PacBio(R) SMRT sequencing
icefoxx/SuperExonRetriver2000
Super complicated bioinformatic file juggling and management system
icefoxx/grape.pipeline.runner
Console script for running Grape RNA-Seq pipelines
icefoxx/rna-seq-scripts
All the ISB-generated scripts for the RNA-Seq project