glennhickey/teHmm
Prototype code for identification of transposable elements in annotated DNA sequence using a HMM.
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glennhickey
Discovered public repositories for glennhickey in the GitHub catalog.
glennhickey/progressiveCactus
Distribution package for the Prgressive Cactus multiple genome aligner. Dependencies are linked as submodules
glennhickey/contigSim
Simulate the evolution of a genome as represented by a pool of contigs
glennhickey/spr
Compute the exact Subtree Prune and Regraft (SPR) distance between pair of unrooted phylogenetic trees
glennhickey/context
Generalization of Pair-HMM sequence aligner that uses a Pair-Tree Adjoining Grammar (TAG) for context sensitivity.
glennhickey/cactus2hal
Convert progressive cactus database into a hal file