genome/sciclone-meta
accessory scripts and documentation related to the sciclone R package at genome/sciclone
Developer Profile
genome
Discovered public repositories for genome in the GitHub catalog.
genome/puppetlabs-postgresql
Puppet module for managing PostgreSQL
genome/ptero-workflow
Client-facing API for the PTero system
genome/UR
Rich Transactional Objects for Perl
genome/git-gerrit
Public repository.
genome/docs
Public repository.
genome/ptero-petri
Petri net core of the PTero system
genome/mcollective-users-agent
Examine active users with this mcollective RPC agent.
genome/ptero-apis
Design documents for the PTero services
genome/nessy-client-perl
Perl client for the nessy-server lock daemon
genome/rex
Provide access to various genome services such as procera, amber, and others.
genome/ptero-shell-command
Ptero services to run shell commands
genome/nessy-server
Public repository.
genome/procera
Public repository.
genome/amber
Public repository.
genome/somatic-snv-test-data
Example Data for SomaticSniper
genome/flow-examples
Public repository.
genome/flow-workflow
Public repository.
genome/flow-core
Public repository.
genome/rss2jira
Create JIRA issues when keywords are matched in RSS feeds.
genome/mendelscan
Analyze exome data for Mendelian disorders. Still in alpha-testing.
genome/gms
The Genome Modeling System installer
genome/bmm
R package that uses a variational Bayesian approach to fitting a mixture of Beta distributions
genome/pindel
Pindel can detect breakpoints of large deletions, medium sized insertions, inversions, tandem duplications and other structural variants at single-based resolution from next-gen sequence data. It uses a pattern growth approach to identify the breakpoints of these variants from paired-end short reads.
genome/chimerascan-vrl
A fork of chimerascan that supports variable read lengths
genome/sciclone
An R package for inferring the subclonal architecture of tumors
genome/configuration-manager
Autoloading configuration manager for use in the genome modeling system
genome/TestTracker
Mirror of internal repository for TestTracker.
genome/pairoscope
simple static plots of read pairing information
genome/gms-webviews
in-progress port of our webviews to rails
genome/tgi-workflow
the workflow server used at TGI
genome/genome_rails_prod
Barebones debian files to make a passenger deb.
genome/ibwa
iBWA is a fork of Heng Li's BWA aligner with support for iteratively adding alternate haplotypes, reference patches, and variant hypotheses.
genome/bam-readcount
Count bases in BAM/CRAM files
genome/tigra-sv
Public repository.
genome/jiraclient
This is a python command line client for Atlassian's Jira issue tracker.
genome/graphite
Graphite Config and Cron Scripts
genome/fqgrep
An approximate sequence pattern matcher for FASTQ/FASTA files.
genome/somatic-sniper
A tool to call somatic single nucleotide variants.
genome/build-common
common build scripts used in c/c++ projects
genome/joinx
a tool for processing .bed and .vcf files
genome/sff2fastq
extract 454 Genome Sequencer reads from a SFF file and convert them into a FASTQ formatted output
genome/Getopt--Complete-for-Perl
custom tab−completion for Perl apps
genome/breakdancer
SV detection from paired end reads mapping
genome/wugc-hudson
Washington University Genome Center Hudson testing suite and deploy scripts