fw1121/QoRTs
Quality of RNA-Seq Toolset
Developer Profile
fw1121
Discovered public repositories for fw1121 in the GitHub catalog.
fw1121/enrichment4GTEx_clusterProfiler
reproduce the functional enrichment analysis presented in GTEx paper using clusterProfiler/DOSE
fw1121/data-algorithms-book
MapReduce and Spark Source Code and Scripts for Data Algorithms Book
fw1121/sga
de novo sequence assembler using string graphs
fw1121/ggbiplot
A biplot based on ggplot2
fw1121/molgenis-pipelines
Pipelines for NGS, imputation, gwas, ...
fw1121/Reseqtools
A Toolkit for analyzing next-generation DNA Re-Sequencing data
fw1121/tigar2
Public repository.
fw1121/biosql
Public repository.
fw1121/github-backup
backs up everything github knows about a repository, to the repository
fw1121/Diversity.jl
Julia package for diversity measurement
fw1121/Schloss_PacBio16S_PeerJ_2015
Repository to accompany "Sequencing 16S rRNA gene fragments using the PacBio SMRT DNA sequencing system"
fw1121/rtax
Rapid and accurate taxonomic classification of short paired-end sequence reads from the 16S ribosomal RNA gene.
fw1121/vr-codebase
The overall codebase developed and used by the Vertebrate Resequencing group at the Sanger Institute
fw1121/reseq
Resequencing pipeline
fw1121/goatools
Python scripts to find enrichment of GO terms
fw1121/SharePathway
a python package for KEGG pathway enrichment analysis with multiple gene lists.
fw1121/snpEnrichment
SNPs enrichment analysis
fw1121/dptscan
Analysis pipeline for genome-wide de novo identification of differential enrichment events from next generation sequencing data
fw1121/pipelines_for_ChIP-seq_analysis
Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.
fw1121/Annocript
Annocript is a pipeline for the annotation of de-novo generated transcriptomes. It executes BLAST analysis with UniProt, NCBI Conserved Domain Database and Nucleotide divisions, Gene Ontology, UniPathways and the Enzyme Commission. It gives information about the longest ORF (using DNA2PEP) and non-coding potential of the sequences (using Portrait). A final heuristic makes Annocript able to identify putative long non-coding RNAs among your transcripts.
fw1121/ontologization
Wrapper for Ontologizer gene ontology analysis tool, with manipulation and display of downstream results
fw1121/PhyloSift
Phylogenetic and taxonomic analysis for genomes and metagenomes
fw1121/MesquiteCore
The core Mesquite repository
fw1121/MrBayesPPtest
Posterior predictive test of partitioned model of nucleotide estimated wiht MrBayes. The simuation part is powered by Evolver of PAML package
fw1121/SWAMP
Sliding Window Alignment Masker for PAML
fw1121/the-art-of-command-line
Master the command line, in one page
fw1121/devium
Dynamic Multivariate Data Analysis and Visualization Platform
fw1121/DeviumWeb
Interactive multivariate data analysis in R implemented in shiny.
fw1121/cgat
CGAT - Computational Genomics Analysis Tools
fw1121/Rosalind
Solutions to Rosalind Bioinformatics Problems
fw1121/sparkit-learn
PySpark + Scikit-learn = Sparkit-learn
fw1121/synergy
Share one mouse and keyboard between multiple computers on your desk.
fw1121/prokka
Rapid prokaryotic genome annotation
fw1121/TransDecoder
TransDecoder source
fw1121/awesome
A curated list of awesome lists
fw1121/data-science-ipython-notebooks
Continually updated Data Science Python Notebooks: Spark, Hadoop MapReduce, HDFS, AWS, Kaggle, scikit-learn, matplotlib, pandas, NumPy, SciPy, and various command lines.
fw1121/strata-teaching-the-elephant-to-read
Code and Presentation slides for Teaching the Elephant to Read
fw1121/osqf2015
Public repository.
fw1121/programming-language-network
The network of programming languages
fw1121/eel-pond
Public repository.
fw1121/metAMOS
A metagenomic and isolate assembly and analysis pipeline built with AMOS
fw1121/screed
a simple read-only sequence database, designed for short reads
fw1121/pygr-draw
Simple drawing code for pygr features
fw1121/musicbox
网易云音乐命令行版本
fw1121/ShowMeTheMoney
A Sentiment Analysis Tool on Financial Data
fw1121/NaS
NaS is a hybrid approach developped to take advantage of data generated using MinION device. We combine Illumina and Oxford Nanopore technologies to produce NaS (Nanopore Synthetic-long) reads of up to 60 kb that aligned with no error to the reference genome and spanned repetitive regions.
fw1121/ComplexityByStartPosition
Creates a rarefaction curve to measure complexity in RNA Seq data using start position
fw1121/angus
Materials for Analyzing Next-Generation Sequencing (ANGUS) course.
fw1121/megahit
MEGAHIT: An ultra-fast single-node solution for large and complex metagenomics assembly via succinct de Bruijn graph