frederic-mahe/hiseq-16s-pipeline
Process Illumina Hi/Mi-Seq 16S amplicons on the really big computer at the University of Florida
Developer Profile
frederic-mahe
Discovered public repositories for frederic-mahe in the GitHub catalog.
frederic-mahe/cutadapt
cutadapt removes adapter sequences from sequencing reads
frederic-mahe/Another-World-Bytecode-Interpreter
"Fabother World" an interpreter for Another World (Out of this world).
frederic-mahe/swarm_breaker2
Swarm breaker companion script for swarm.
frederic-mahe/ESS
Git development branch
frederic-mahe/qiime
Quantitative Insights Into Microbial Ecology (QIIME): Official repository for software and unit tests
frederic-mahe/liquidprompt
A full-featured & carefully designed adaptive prompt for Bash & Zsh
frederic-mahe/pairdist
Creates a neighbor-joining tree from a set of sequences, using maximum likelihood distances based on pairwise sequence alignment
frederic-mahe/TAXAassign
Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy
frederic-mahe/bioman
manual pages for the bioinformatician
frederic-mahe/bash-emacs-editing-mode-cheat-sheet
Bash has two input modes - emacs and vi. This is emacs input/editing mode keyboard shortcut cheat sheet.
frederic-mahe/bash-redirections-cheat-sheet
Bash redirections cheat sheet
frederic-mahe/khmer
in-memory k-mer counting
frederic-mahe/bioinformatics-scripts
A collection of useful bioinformatics scripts
frederic-mahe/swarm
A robust and fast clustering method for amplicon-based studies