fiji/Cross_Fader
An ImageJ 1.x plugin that takes a two-slice stack and copies part of the second slice into the current one.
Developer Profile
fiji
Discovered public repositories for fiji in the GitHub catalog.
fiji/Updater_Fix
Public repository.
fiji/weave_jy2java
A framework for inlining java code in an otherwise interpreted programming language running on the JVM, such as jython. See https://github.com/fiji/fiji/issues/161
fiji/registration_3d
Public repository.
fiji/register_virtual_stack_slices
Fiji package for registering and transforming arbitrarily large sequences of images
fiji/panorama
Public repository.
fiji/fiji-scripting
OBSOLETE; see https://github.com/scijava/script-editor
fiji/fiji-lib
Public repository.
fiji/fiji-compat
[OBSOLETE] Merged with fiji/fiji
fiji/blockmatching
Public repository.
fiji/Volume_Viewer
Public repository.
fiji/Volume_Calculator
Public repository.
fiji/View5D
Public repository.
fiji/Video_Editing
Public repository.
fiji/Vaa3d_Reader
Public repository.
fiji/VIB
Public repository.
fiji/VIB-lib
Public repository.
fiji/TrakEM2_Archipelago
Public repository.
fiji/ToAST
Public repository.
fiji/Time_Stamper
Public repository.
fiji/Threshold_Colour
OBSOLETE; included with https://github.com/imagej/imagej1
fiji/Thread_Killer
Public repository.
fiji/Sync_Win
Public repository.
fiji/Statistical_Region_Merging
Public repository.
fiji/Stack_Manipulation
Public repository.
fiji/SplineDeformationGenerator
Public repository.
fiji/Skeletonize3D
ImageJ/Fiji plugin to skeletonize binary images
fiji/SNT
Legacy project superseded by https://github.com/morphonets/SNT
fiji/Series_Labeler
Public repository.
fiji/Scala_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/SPIM_Opener
Public repository.
fiji/Refresh_Javas
OBSOLETE
fiji/Reconstruct_Reader
Public repository.
fiji/RATS
RATS: Robust Automatic Threshold Selection
fiji/QuickPALM
Public repository.
fiji/PIV_analyser
Public repository.
fiji/Multi_Kymograph
Public repository.
fiji/Manual_Tracking
Public repository.
fiji/M_I_P
Public repository.
fiji/MTrack2
Public repository.
fiji/LocalThickness
Public repository.
fiji/Linear_Kuwahara
Public repository.
fiji/Lasso_and_Blow_Tool
Public repository.
fiji/Kuwahara_Filter
Public repository.
fiji/Jython_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/Javascript
OBSOLETE; see https://github.com/scijava/script-editor
fiji/JRuby_Interpreter
OBSOLETE; see https://github.com/scijava/script-editor
fiji/IsoData_Classifier
Public repository.
fiji/Interactive_3D_Surface_Plot
Public repository.
fiji/Image_Expression_Parser
Public repository.