ekg/filevercmp
filevercmp function as in sort --version-sort
Developer Profile
ekg
Discovered public repositories for ekg in the GitHub catalog.
ekg/vrann
variant quality recalibration by artificial neural network
ekg/ktree
kmer trie generator; ktree(string, k) -> XML trie of k-mers in string
ekg/xbzipLib
XBzip/XBWT implementation from "Compressing and indexing labeled trees, with applications," P Ferragina et al.
ekg/1000G-integration
variant integration methods for the 1000 Genomes Project
ekg/contend
a command-line utility to generate contingency tables between categorical variables
ekg/entropy
shannon entropy
ekg/arfer
annotation of variants using genotype likelihoods
ekg/bamqualbinner
bins quality scores in BAM data for better compression (and testing of lossy compression)
ekg/glia
a string to graph aligner
ekg/rzmblr
Read aZeMBLeR, pairwise-alignment based overlap graph generation from local alignments
ekg/fsom
A tiny C library for managing SOM (Self-Organizing Maps) neural networks
ekg/bamtools
C++ API & command-line toolkit for working with BAM data
ekg/gencode
Scripts for working with data from GENCODE.
ekg/kmers
generate kmer frequency information from text streams
ekg/vatfilter
extensions for manipulating VCF files annotated with the Variant Annotation Tool (VAT)
ekg/intervaltree
a minimal C++ interval tree implementation
ekg/tsvtools
tools for manipulating tab-separated-values files, mostly in C++
ekg/uniqprimers
determines if the primers required to assay VCF records are unique (provided BAM alignments of the primers and a VCF file of the variants)
ekg/bamprofile
profiles alignment mismatches and gaps
ekg/gprof-compare
compare call counts in two gprof profile outputs
ekg/nuller
null genotype caller which generates depth of coverage VCF
ekg/bamaddrg
adds sample names and read-group (RG) tags to BAM alignments
ekg/tsvsplit
split tsv files with headers
ekg/ogap
gap opening realigner for BAM data streams
ekg/smithwaterman
smith-waterman-gotoh alignment algorithm
ekg/hapviz
indel haplotype visualization on the command line from BAM files
ekg/mutatrix
genome simulation across a population with zeta-distributed allele frequency, snps, insertions, deletions, and multi-nucleotide polymorphisms
ekg/bamquality
read quality distributions for BAM and FASTQ files
ekg/shuntingyard
implementations of Dijkstra's shunting-yard algorithm for infix notation parsing
ekg/wikiq
an xml to .tsv converter for wikimedia XML data dumps
ekg/split
split and join for C++ strings
ekg/phred.py
phred quality conversion to and from float and log space
ekg/parallelizer
scripts to simplify trivial parallelization of data processing software
ekg/fasta-utilities
utility scripts and programs for manipulating fasta files
ekg/multichoose
generate multiset combinations (n multichoose k)
ekg/fastahack
utilities for indexing and sequence extraction from FASTA files
ekg/jvcf
Joint Variant Call Format -- JSON notation for genetic variant annotation
ekg/USDA-SR22-importer
assists in importing the USDA's SR22 nutritional database from MS Access to MySQL
ekg/ssh.py
synchronous, serial, and parallel ssh, scp, and ping methods in python
ekg/fraction.js
A fraction math library in javascript.
ekg/node
evented I/O for v8 javascript