eclarke/config
Erik's Config Files
Discovered public repositories for eclarke in the GitHub catalog.
Erik's Config Files
general utilities for manipulating sequences and fasta files - high performance kmer counting
A few utility functions in R
Select primer sets for selective whole genome amplification (SWGA)
Quantitative Insights Into Microbial Ecology - parsing and plotting functions for R
Notes from CIS 520: Machine Learning @ UPenn
A shitty little quiz program to help you memorize the abbreviations and polarity/charge of the amino acids.
phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. See the phyloseq front page:
Scripts relating to somatic immunoglobulin recombination in XSCID patients
Multivariate mixture modeling with biological corrections for expression data
Colour Schemes for Hackers
Parses GO OBO files, with (limited) reasoning
Pipeline for the mass analysis of GEO datasets using historical versions of the Gene Ontology annotations.
Official git repository for Biopython (converted from CVS)
blog
Java framework to create live mirrors of MediaWiki sites.