drmjc/o8
Genetic changes we can believe in: a web based tool for variant visualization and analysis
Developer Profile
drmjc
Discovered public repositories for drmjc in the GitHub catalog.
drmjc/mjcaffy
An R package for Affymetrix microarray data analysis
drmjc/mjcstats
An R package of simple statistics code.
drmjc/microarrays
An R package containing a collection of microarray and genomic helper code.
drmjc/metaGSEA
An R package for I/O of GenePattern datatypes, and running meta-GSEA analyses
drmjc/macsR
An R package for handling MACS (ChIP-Seq) result files
drmjc/lumidat
An R package for processing Illumina gene expression idat files
drmjc/blat
An R package for I/O of UCSC BLAT data.
drmjc/genomics
An R package of code for genomics (mostly pre-NGS)
drmjc/mjcgraphics
An R package of graphics plots. Mostly base graphics for bioinformatics data
drmjc/updateR
An R package for rapid R package development. The workhorse is updateR.sh, which can roxygenize, build, install, testthat, and deploy
drmjc/mjcbase
An R package of useful utilities that I find useful on a day to day basis.
drmjc/excelIO
an R package for I/O of Microsoft Excel files
drmjc/gatk-protected
GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only
drmjc/bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
drmjc/gemini
a lightweight db framework for disease and population genetics.
drmjc/grabix
a wee tool for random access into BGZF files.
drmjc/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
drmjc/textmate_bundles
drmjc's textmate bundles
drmjc/Paradigm
PAthway Representation and Analysis by Direct Inference on Graphical Models
drmjc/test_that
An R package to make testing fun
drmjc/roxygen
Public repository.