douglasgscofield/gameteUtils
Set of tools for analysing the genetics and genomics of gametes
Developer Profile
douglasgscofield
Discovered public repositories for douglasgscofield in the GitHub catalog.
douglasgscofield/dispr
Degenerate In-Silico PcR
douglasgscofield/PacBio-utilities
Collection of utilities for working with PacBio-based assemblies
douglasgscofield/R-package-utilities
Collection of files, templates, tips, etc. to ease the creation and maintenance of R packages
douglasgscofield/fastrank
R package providing fast ranking for integer and numeric vectors, an alternative to calling .Internal(rank(...))
douglasgscofield/nestedRanksTest
R package providing a mixed-model Mann-Whitney-Wilcoxon test with nested ranks
douglasgscofield/readGenalex
R package for reading GenAlEx-format genotype files
douglasgscofield/add-to-Qiime-DB
Small set of scripts to ease the expansion of a Qiime reference database
douglasgscofield/EBC-Perl-Hacks
Repository for the Perl Hacks meeting group in the Evolutionary Biology Centre at Uppsala University
douglasgscofield/seqtools-4.28
My version of https://www.sanger.ac.uk/resources/software/seqtools/ 4.28, adds extra dotplot options
douglasgscofield/hcluster
My git clone of Heng Li's hcluster from http://sourceforge.net/p/treesoft/code/HEAD/tree/branches/lh3/
douglasgscofield/uppmax
Uppmax-themed repository
douglasgscofield/bamtools
C++ API & command-line toolkit for working with BAM data
douglasgscofield/sparseMEM-big
Big-genome modification to sparseMEM from Khan et al.
douglasgscofield/snpEffect
Determine the effect of individual SNPs and indels
douglasgscofield/psari
Pseudogene discovery
douglasgscofield/samla
Examine collection of parallel VCF files and produce consensus variant calls
douglasgscofield/chrom-gc
Models chromosome structure to study recombination
douglasgscofield/branchrates
Calculates branch-specific evolutionary rates for homologous characters
douglasgscofield/GeneticSimLib
Update of John Conery's Genetic Simulation Library
douglasgscofield/tinyutils
Collection of tiny utilities for working on data streams
douglasgscofield/data
Data repository, containing published and unpublished datasets
douglasgscofield/smorgas
Eat samtools' mpileup and do interesting things; for de novo sequencing projects
douglasgscofield/riker
Reasonable replacements for Picard tools
douglasgscofield/yoruba
Query and modify BAM file contents; provides functions missing from some other tools
douglasgscofield/pubs
Repository for scripts, etc. associated with publications
douglasgscofield/K
K implements Kondrashov's 1985 model for genomic mutation, with some extras
douglasgscofield/popgen
Tools for population genetics analysis.
douglasgscofield/whyp
Maximum-likelihood assignment of parentage
douglasgscofield/bioinfo
Various bioinformatics tools
douglasgscofield/dispersalDiversity
Analyse individual and genetic diversity of dispersal processes in biological populations