ding-lab/hotspot3d_portal
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ding-lab
Discovered public repositories for ding-lab in the GitHub catalog.
ding-lab/breakdancer
SV detection from paired end reads mapping
ding-lab/Pindel2BAM
Convert Pindel data into SAM & BAM formats.
ding-lab/squaredancer
SV Detection for soft-clipped genomic or cDNA reads
ding-lab/cmds
Cohort DNA Copy Number Analysis
ding-lab/bassovac
Improved Bayesian inversion somatic caller
ding-lab/PASSion
Paired-end RNA-Seq splice site detection
ding-lab/bassovacmate
a wrapper for Bassovac tool
ding-lab/hotspot3d
3D hotspot mutation proximity analysis tool
ding-lab/rareprob2
Identifying significantly deleterious variants from germline variation and somatic mutational events
ding-lab/parse-cosmic
Script to carefully parse through and standardize somatic variant lists from COSMIC
ding-lab/pindel2
Detecting break points of large deletions and medium sized insertions from paired-end short read
ding-lab/vcf2maf
Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms
ding-lab/3d-portal
3D proximity visulization portal
ding-lab/msisensor
microsatellite instability detection using tumor only or paired tumor-normal data
ding-lab/MuSiC2
identifying mutational significance in cancer genomes
ding-lab/parse-kegg
Script to format KEGG pathway data for PathScan
ding-lab/calc-roi-covg
Given two BAM files, a reference sequence, and regions of interest, count the AT, CG, or CpG sites with sufficient read-depth in both BAMs.