danmaclean/fragmented_genome_with_snps
Model a fragmented genome with SNPs using R/Ruby
Developer Profile
danmaclean
Discovered public repositories for danmaclean in the GitHub catalog.
danmaclean/talks
Links and misc stuff for talks that I have given
danmaclean/h_pseu_analysis
Public repository.
danmaclean/basespace-dojo
Public repository.
danmaclean/basespace-ninja
Public repository.
danmaclean/barmcakes
Ruby Scripting Utilitys
danmaclean/test_gee_fu_data
data store for a geefu instance
danmaclean/candisnp
code for candiSNP web tool
danmaclean/Bubble-Parse
Perl module for bubbleparse
danmaclean/Biscap
Binomial SNP-caller from pileup
danmaclean/bubbleparse
Classify and rank SNPs identified by cortex_con
danmaclean/bioruby-synreport
Public repository.
danmaclean/bioruby-svgenes
SVG format genome browser style pictures
danmaclean/crowdsrc
Generic and blank repository for holding crowdsourced genomics data
danmaclean/bioruby-gngm
Identify causative mutations in a model genome from NGS reads using the NGM method.
danmaclean/vcfruby
Public repository.
danmaclean/bioruby-samtools
Porting of samtools-ruby to BioRuby. Binder of samtools for ruby, on the top of FFI -from original project-
danmaclean/gee_fu
An extensible Ruby on Rails web-service application and database for visualising HTGS data
danmaclean/NiBLS
Implementation of an algorithm that can determine small RNA generative loci from high-throughput sequencing data.
danmaclean/Documents
HTML Documentation describing usage of Perl Modules
danmaclean/WebPages
module for formatting and producing web pages for pretty result output
danmaclean/bsblast
Varied tools for parsing and printing pretty blasts from de-novo peptide sequencing
danmaclean/PhosDB
A prototype rails app for a phosphoproteomics analysis tool and database
danmaclean/FileSysTools
set of methods for working with files and directories that I use often
danmaclean/DanMaths
Some numerical methods I use fairly often
danmaclean/Solexa
Set of modules for working with htgs reads and related software, maq, Bowtie etc
danmaclean/PhosphoTools
Perl Module for phosphoproteomics related bioinformatics tasks
danmaclean/PhosCalc
The Sainsbury Lab Tool for estimating the likelihood of phosphorylation at possible sites in a peptide from Mass Spec data