cplaisier/Normalizer
Code for normalizing count data.
Developer Profile
cplaisier
Discovered public repositories for cplaisier in the GitHub catalog.
cplaisier/cmonkey-python
Python port of cMonkey, a machine-learning based method for clustering
cplaisier/buildTFBSDB
Builds a Transcription Factor Binding Site (TFBS) database (DB) for use as an input to cMonkey via set enrichment.
cplaisier/FIRM
Framework for Inference of Regulation by miRNAs (FIRM)
cplaisier/isbIntoSysBio
R scripts for introduction to systems biology at ISB.
cplaisier/Trans_eQTL_Hotspot_Viewer
Visualization of trans-eQTL hotspots for mouse genome.
cplaisier/Cancer-miRNA-Regulatory-Network
A database containing the predictions for the Cancer miRNA-Regulatory Network.
cplaisier/d3
A JavaScript visualization library for HTML and SVG.
cplaisier/cmonkey
cMonkey integrated biclustering algorithm
cplaisier/miRvestigator_standalone
Stand alone version of miRvestigator HMM that takes as input a FASTA stlyed PSSM file.
cplaisier/KEGGTap
An interface to get the latest KEGG data and compare it to sets of genes for over-representation.
cplaisier/miRvestigator_www
A web server version of the miRvestigator framework.
cplaisier/offYerBack
Code to access cMonkey RData objects and provide the data in a Python friendly manner.
cplaisier/Sequence-Extractor
Extracts sequence for promoter and 3' UTR regions. Eventually will be developed to extract all potential cis-regulatory regions.
cplaisier/miRvestigator
Identify miRNA that binds to a PSSM motif from 3' UTR.