cmungall/term-enrichment-protocol
Documentation on REST API and JSON payload for term enrichment services
Developer Profile
cmungall
Discovered public repositories for cmungall in the GitHub catalog.
cmungall/Wao
worm gross anatomy
cmungall/Life-stage-obo
C. elegans development ontology
cmungall/go-mme
Prototype editor frontend for the Molecular Modal Environment for the Gene Ontology.
cmungall/modal-in-owl
Notes on modeling modal quantifiers in OWL
cmungall/obolibrary-purl-checker
Checks obolibrary.org PURLs
cmungall/species-vulnerability-traits
Code for the NESCent–EOL–BHL Research Sprint, February 4-7, 2014
cmungall/gaz
gaz
cmungall/communo
Scratch space for prototypes/docs on community ontology platform
cmungall/testwiki
testing export of entire ontology to md
cmungall/vmao
variant metazoan anatomy ontology
cmungall/bubastis
Bubastis - OWL Diff tool
cmungall/amigo
AmiGO is the public interface for the Gene Ontology.
cmungall/shadowboxing-paper
draft of paper: Shadowboxing: Mirroring the TBox in the ABox
cmungall/owljs
Javascript wrapper for the OWLAPI
cmungall/heroku-buildpack-ringojs-jdk7
Builtpack to use RingoJS with Heroku
cmungall/bbop-js
Cross-platform client and server JavaScript library, with a concentration on Solr, graphs, utilities, and convenience methods.
cmungall/FALDO-paper
Public repository.
cmungall/Bio-FeatureIO
Sequence Feature streams
cmungall/obo-anatomy-analysis
historic analysis of OBO anatomy ontologies
cmungall/diseaseontology-diabetes
Merge of OrphaNet rare genetic diabetes subset plus DO
cmungall/behavior-lego
modeling of behavioral sequence using lego formalism
cmungall/temporalized-relations-critique
paper in progress
cmungall/owlhack
library for hacking owl in perl
cmungall/semsimo
Semantic similarity ontology
cmungall/sql_compiler-OLD
Draxler prolog to SQL compiler
cmungall/pldbc
Prolog database connectivity interface
cmungall/roge-engine
Rhino Ontology Generation Engine
cmungall/roge-name
Rhino Ontology Generation Engine
cmungall/ensvar-phenotype
ontologizing phenotype descriptions from ensvar
cmungall/shoge
Serial Homology Ontology Generation Engine
cmungall/cmungall.github.com
Public repository.
cmungall/blipkit
biological logic programming toolkit
cmungall/obo2owl
collected documents specifying new obo<->owl translation
cmungall/onto-scratch
scratchpad area for ontology demos etc
cmungall/obo-scripts
standalone perl scripts for hacking obo files
cmungall/bioperl-owl
bioperl extensions for OWL generation
cmungall/bio-d2rq-mappings
Mappings to present bio-databases as SPARQL endpoints
cmungall/stag
Collects Data::Stag, DBIx::DBStag, biostag
cmungall/bio-clif
Common logic axioms enhancing various bio-ontologies
cmungall/biostag
Stag SQL templates for various bio-databases
cmungall/DBIx-DBStag
Relational Database to Hierarchical (Stag/XML) Mapping
cmungall/data-stag
perl module for querying and manipulating complex data as recursively nested tag/value pairs (Structured tags or Simple Tree aggreggates)
cmungall/biowarehouse
Code to download and convert data from various online bioinformatics repositories
cmungall/dbic_chado
Meant to be a standard DBIx::Class layer for the Chado database schema. Generated using DBIx::Class::Schema::Loader
cmungall/cltools
tools for common-logic
cmungall/intervaldb
prolog wrapper for PyGR Nested Containment Lists (NCLs)