Discovered public repositories for chr1swallace in the GitHub catalog.
This repository contains R functions to compute the 'Conditional False Discovery Rate', a method to analyse genome-wide association studies (GWAS) for related diseases originally proposed by Andreasson et al (2013), in the case where the two GWAS have shared controls.These functions widen the scope of the existing technique and enable improved power.
simple fine mapping script in R used as the basis for analyses in Bowes et. al (2015), Dense genotyping of immune-related susceptibility loci reveals new insights into the genetics of psoriatic arthritis.
Public repository.
Tools to make an R developer's life easier
Public repository.
R package for fine mapping genetic associations in imputed GWAS data.
cluster beta/gaussian mixture data
R code used to explore appropriate p value thresholds for calling genetic association in one disease given genomewide significant genetic association at the same SNP in a related disease in the T1D ImmunoChip paper (Onengut et al, in press)
repo for R package annotSnpStats
R functions to extend the CRAN BMA library to deal with dense genotyping data. NOT YET WORKING!!!!
Odd bits of LaTeX code
Repo for the R package origin
Repo for the R package coloc
Repo for the R package snpStatsWriter
Repo for the R package wgsea
Public repository.
R functions for which I want some version control