chapmanb/delly
DELLY: Structural variant discovery by integrated paired-end and split-read analysis
Developer Profile
chapmanb
Discovered public repositories for chapmanb in the GitHub catalog.
chapmanb/bcbio.adam
Experiment: Clojure interface to ADAM distributed file formats for variants and aligned reads
chapmanb/vcflib
a simple C++ library for parsing and manipulating VCF files, + many command-line utilities
chapmanb/glia
a string to graph aligner
chapmanb/bcbio.run
Idempotent, transactional runs of external command line programs
chapmanb/homebrew-cbl
Homebrew repository for CloudBioLinux: incubator for formulas to end up in homebrew-science
chapmanb/homebrew-science
Scientific formulae for the Homebrew package manager
chapmanb/samtools
Public repository.
chapmanb/grabix
a wee tool for random access into BGZF files.
chapmanb/bcbio.variation.plus
Extended functionality for analyzing genomic variability, built on bcbio.variation and GATK
chapmanb/gatk
GATK Official Release Repository: contains the core MIT-licensed GATK framework, free for all uses
chapmanb/scipy2013_talks
Content presented at the 2013 SciPy conference
chapmanb/conda-recipes
build and test recipes for conda
chapmanb/bio.ensembl
Clojure API for Ensembl data access via JEnsembl
chapmanb/bcbio.coverage
Investigate coverage metrics for variant calling experiments
chapmanb/bioblend
A python library for interacting with CloudMan and Galaxy API
chapmanb/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
chapmanb/c2
Declarative data visualization in Clojure(Script).
chapmanb/clj-gcon
Genome Connector: Clojure API to access multiple genomic resources
chapmanb/gkno_launcher
The gkno launcher for executing tools or pipelines
chapmanb/cljs-chosen
ClojureScript interface to Harvest's Chosen <select> library
chapmanb/o8
Genetic changes we can believe in: a web based tool for variant visualization and analysis
chapmanb/CircDesigNA
Multimolecular NA Design tool with support for extensible sequence constraints
chapmanb/clj-genomespace
Access GenomeSpace data integration platform with simple Clojure API
chapmanb/clj-blend
Clojure library for interacting with Galaxy, CloudMan, and BioCloudCentral, built on blend4j
chapmanb/cyvcf
A fast Python library for VCF files leveraging Cython for speed.
chapmanb/gemini
a lightweight db framework for disease and population genetics.
chapmanb/bcbio.pipeline
Next-generation sequencing analysis pipelines built on Hadoop and Cascalog
chapmanb/bcbio.variation
Toolkit to analyze genomic variation data, built on the GATK with Clojure
chapmanb/chapmanb.github.com
Public repository.
chapmanb/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
chapmanb/kwd-doc-find
Clojure web server providing full-text document searching via Lucene
chapmanb/mgh_projects
In-progress code for various research projects
chapmanb/r-var
Exploring our genomic variability
chapmanb/biopython
Brad's fork of main repository
chapmanb/biosqlweb
BioSQL web
chapmanb/bcbb
Incubator for useful bioinformatics code, primarily in Python and R