cgd/phylotosdp
Public repository.
Developer Profile
cgd
Discovered public repositories for cgd in the GitHub catalog.
cgd/QTLViewer
Public repository.
cgd/bioinf-data
java code for reading/writing/manipulating bioinformatics data
cgd/Cheat_Sheets
Cheat sheets and tips for various languages and software.
cgd/emma-scripts
R scripts to simplify using the EMMA package with CSV genotypes and MPD phenotypes
cgd/genetic-util
Some utility data structures and utility function for handling SNPs and haplotypes in Java (experimental)
cgd/haplotype-inference
Java code to infer haplotype structure (experimental)
cgd/haplotype-analysis
Java code for analysis of haplotype data (experimental)
cgd/j-maanova
A Java swing front-end to the R/maanova package.
cgd/pub-array
A swing based java application for building web applications from analized microarray data
cgd/gwt-client-util
Some utility classes for browser-side GWT
cgd/bham
A swing based java application for association mapping (experimental)
cgd/rjava-interface
Built on top of the JRI library. This library includes command queueing logic for thread-safety. Used by J/qtl and J/maanova.
cgd/rjava-conf-schema
XSD schema module for applications combining R and Java
cgd/managed-jvm-launcher
Java source for launching a new JVM. Used by J/maanova and J/qtl to work around some WebStart limitations
cgd/data-plots
Some of the 2D data plots code used in J/maanova and J/qtl
cgd/build-common
Some shared ant/ivy/jar files used for my other projects
cgd/java-util
Java utilities created for projects in the Churchill Group
cgd/drake-genetics
An educational web application for exploring genetics using the fictional drake genome.
cgd/hmmSNP
HMM software for imputing missing genotypes in SNP datasets
cgd/maanova
A clone of the bioconductor R/maanova repository