cassj/hefceref
Public repository.
Developer Profile
cassj
Discovered public repositories for cassj in the GitHub catalog.
cassj/SVMergeSGE
modifications to SVMerge to generate SGE jobs instead of LSF
cassj/dzil-profiles
Public repository.
cassj/excel2csv
make csv files form simple excel workbooks
cassj/piman
Public repository.
cassj/puppet_stuff
Public repository.
cassj/ns5_ns5dastro_h3k4me3_peakdiff
Public repository.
cassj/MISO
MISO
cassj/bithell_Mash1_ChIP_meta
Public repository.
cassj/volta_REST_ChIP_meta
Public repository.
cassj/cahoy_et_al
Public repository.
cassj/Chiara_d4_c18_timecourse_expression
Public repository.
cassj/REST_ChIP_timecourse
Public repository.
cassj/chiara_miRNA_REST
Public repository.
cassj/mouse_NSC_REST_ChIP
Public repository.
cassj/chipseq_pipeline
Scripts for Buckley Lab ChIPseq pipeline
cassj/neuronal_cell-line_faireseq
Gerome Breen's Neuronal Cell Line FAIREseq data
cassj/dexy
Public repository.
cassj/buckley_ami
Public repository.
cassj/mouse_ESC_REST_ChIPseq
Public repository.
cassj/ProjectManager
Tools for keeping track of bioinfo projects
cassj/Rest_ChIPseq_timecourse
Rest ChIPseq timecourse (Chiara Soldati)
cassj/DNRest_timecourse_lumixpn
Expression data from DNRest Time Course (Chiara Soldati)
cassj/DNRest_aNSCvNS5
A comparison of the effects of DNRest in NS5 and aNSC
cassj/aSVZ_REST_ChIP
Public repository.
cassj/awesomething
playing with the sciverse stuff at dev8D
cassj/Magdalena_Astrocytes
Expression data from Goetz lab
cassj/REST_ChIPseq_109-109
Chiara Soldati's REST ChIPseq in 109/109 cells
cassj/Abrajano_REST_CoREST_ChIPchip_stemcells
doi:10.1371/journal.pone.0007936
cassj/Abrajano_REST_CoREST_ChIPchip_neuronal
doi:10.1371/journal.pone.0007936
cassj/Abrajano_REST_CoREST_ChIPchip_glial
doi:10.1371/journal.pone.0007665
cassj/ctx_bmp_lumiarray
Alessandro Michelucci's NS5/CTX BMP/FBS Illumina expression data
cassj/FloResCre_ChIPseq
ChIPseq for various Histone modifications in FloRes and FloResCre cell lines (Chiara Soldati)
cassj/Bio-Tools-Primer3Redux
A reimplementation of BioPerl's Primer3-related code for primer3 v1 and v2
cassj/primer_designer
Primer design helpers for the Buckley lab
cassj/bioperl-sfold
Bioperl Run wrappers for Sfold
cassj/bioperl-wrapperbase-accessors
Autogeneration of accessors for parameters in bioperl wrappers
cassj/bioperl-unafold
Bioperl wrapper, parser for Unafold
cassj/mohn_08_chipchip
Lineage-Specific Polycomb Targets and De Novo DNA Methylation Define Restriction and Potential of Neuronal Progenitors
cassj/Creyghton_H3k27ac
Histone H3K27ac separates active from poised enhancers and predicts developmental state
cassj/CTX12_H3K4me4_ChIPseq_mini
Public repository.
cassj/pasquale_DNRest_illumina
Pasquale's DNRest illumina expression data
cassj/FloRes_vs_FloResCre_RNAseq
Chiara Soldati's RNAseq (SOLiD) data from ESC cells with a REST Conditional Knockout
cassj/CTX12_Astro_H3K4me_ChIPseq
Alessandro Michelucci's ChIPseq for H3K4me3 (vs Input) in CTX12 NSCs and in Astrocytes derived from that cell line
cassj/role_of_rest_in_astrocytes
Integrative analysis of various REST in astrocyte datasets
cassj/Johnson_CHIPPET
Rory Johnson's REST ChIPPET and expression data from ESC and NS5 cells
cassj/ns5_vs_ns5dastro_lumixpn
Manu & Angela's NS5 vs NS5-derived astrocyte Illumina Bead Array expression data
cassj/mikkelsen07
ChIPseq data from Mikkelsen '07 (|doi:10.1038/nature06008)
cassj/mef_h3k4me3_mikkelsen
H3k4me3 ChIPseq in Mouse Embryonic Fibroblasts from Mikkelsen
cassj/ns5dastro_h34kme3_chipseq
Alessandro's H3k4me3 ChIPseq data from NS5-derived Astrocytes