bhklab/cdrug-rebuttals
Analysis pipeline implementing the response to the rebuttal letters in Nature
Developer Profile
bhklab
Discovered public repositories for bhklab in the GitHub catalog.
bhklab/NetInfPriors
R code accompanying Olsen et al., Frontiers In Genetics, 2014
bhklab/cdrug
Inconsistency in large pharmacogenomic studies
bhklab/RamiGO
AmiGO Visualize interacting with R
bhklab/DNA11161
Public repository.
bhklab/mRMRe
mRMRe is a package for Parallelized Minimum Redundancy, Maximum Relevance (mRMR) Ensemble Feature Selection
bhklab/survcomp
R package for performance assessment and comparison for survival analysis
bhklab/genefu
R package providing various functions relevant for gene expression analysis with emphasis on breast cancer.
bhklab/predictionet
This package contains a set of functions related to network inference combining genomic data and prior information extracted from biomedical literature and structured biological databases.The main function is able to generate networks using bayesian or regression-based inference methods; while the former is limited to < 100 of variables, the latter may infer network with hundreds of variables. Several statistics at the edge and node levels have been implemented (edge stability, predictive ability of each node, ...) in order to help the user to focus on high quality subnetworks. Ultimately, this package is used in the 'Predictive Networks' web application developed by the Dana-Farber Cancer Institute in collaboration with Entagen