audy/bio-dat
Examples/experiments of using dat with bioinformatics (sequence) data.
Developer Profile
audy
Discovered public repositories for audy in the GitHub catalog.
audy/sunny_bot
IRC weather bot
audy/import-sequences
Horrifying hack for importing raw DNA sequencing reads into a standard format
audy/hdf5-dna
Examples and experiments of using HDF5 and h5py with biological sequence data
audy/richardson-2014
Analysis code for the DIPP microbiome study
audy/presentations
My presentations and talks
audy/SomePackage
Python package boilerplate with unit testing and setuptools.
audy/bio-xl
Tools for dealing with large (> memory) collections of nucleotide sequences
audy/hiseq-16s-pipeline
Process Illumina 16S amplicons on the really big computer at the University of Florida
audy/bfc
Move along. Nothing to see here.
audy/bleep-bloop
Procedurally generated, therapeutic bleeps and occasionally bloops
audy/catsay
:cat: :computer: like cowsay but cats
audy/la-microbioma
Listen to the beautiful music of the microbiome!
audy/poster-session-bootstrap
Create academic style posters by editing markdown files. Focus on content instead of layout.
audy/pipet
Bioinformatics Database "Package Manager"
audy/greenhouse-monitor
Code and specs for a remote, always-on (3G), temperature and humidity sensor running on a Raspberry Pi
audy/smalldata
Small(-ish) datasets for fun and teaching
audy/sharkbot
Grooveshark IRC bot
audy/audy.github.io
my site / blog
audy/craigslist-twitter-bot
Craigslist-scraping Twitter bot
audy/thrash
Randomly write to many, many files. Created out of ignorance and desperation.
audy/tree-of-life
:deciduous_tree: API for NCBI taxonomic lineages
audy/deutsch-bot
Ruby IRC bot to teach myself German
audy/lederhosen
User-friendly tool to quickly go from 16S rRNA sequence data to an OTU matrix
audy/dna
A biological sequence file (fasta, fastq, qseq) parser for Ruby
audy/miniblog
mini tiny bloggy thingy
audy/skellington
:skull: World's Greatest Sinatra Skeleton
audy/sequence-storage
web app for managing lots of sequence data
audy/rrna_validation
Final Project for ZOO6927 - Methods of Phylogenetic Inference
audy/memelicious
Parser of internet memes
audy/pangea3
OTU clustering pipeline based on CLC Assembly Cell
audy/C
I took this class and got a B
audy/cram
Comparative, Rapid Analysis of Metagenomes
audy/pangea
taxonomy-dependent short read 16S rRNA classifier
audy/Forage
grep for nucleotides
audy/Grape
Distributed BLAST
audy/miniblast
The usual seed and extend search algorithm implemented in Ruby.
audy/banana
A tool for handling multiplexed 454 and Illumina generated sequence data
audy/phylograph
Project for a class
audy/cd-hit-that
Public repository.
audy/domain-name-generator
generat.es clev.er sho.rt doma.in nam.es
audy/clump
Another class project
audy/taxcollector
16S rRNA database
audy/dotflies
~ bleep bloop
audy/bioinformatics-hacks
Scripts for miscelleneous bioinformatics tasks
audy/stitch
Overlap assembler of paired-end DNA sequences generated by Illumina
audy/phony
prints combinations of words that can be generated by the same numbers on a dial-pad and "predictive text"