arq5x/bedtools-protocols
Public repository.
Developer Profile
arq5x
Discovered public repositories for arq5x in the GitHub catalog.
arq5x/homebrew-science
Scientific formulae for the Homebrew package manager
arq5x/bedtools2
bedtools - the swiss army knife for genome arithmetic
arq5x/tutorials
Public repository.
arq5x/bedtools-v2.18-alpha
Preliminary repository for what will be the v2.18 release.
arq5x/codachrom
Chromosomal copy number tools.
arq5x/cloudbiolinux
CloudBioLinux: configure virtual (or real) machines with tools for biological analyses
arq5x/piledriver
Basic, no assumptions, multi-pileup
arq5x/intervaltree
a minimal C++ interval tree implementation
arq5x/toy_bottle_bootstrap_app
A demonstration of using bottle with bootstrap for basic web app development
arq5x/matplotlib
Public repository.
arq5x/homebrew
The missing package manager for OS X.
arq5x/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
arq5x/lumpy_paper
A probabilistic framework for sensitive structural variant discovery
arq5x/scurgen
A tool for detecting patterns in genomic data with space filling curves
arq5x/bits
BITS: Binary Interval Search
arq5x/lab_website
quinlan lab website (quinlanlab.org)
arq5x/htslib
C library for high-throughput sequencing data formats
arq5x/bits_paper
Public repository.
arq5x/grabix
a wee tool for random access into BGZF files.
arq5x/cyvcf
A fast Python library for VCF files leveraging Cython for speed.
arq5x/gemini
a lightweight db framework for exploring genetic variation.
arq5x/PyVCF
A Variant Call Format reader for Python.
arq5x/vcflib
a simple C++ library for parsing and manipulating VCF files
arq5x/vitae
Public repository.
arq5x/bash_completion
Public repository.
arq5x/bioawk
BWK awk modified for biological data
arq5x/html5demos
Collection of hacks and demos showing capability of HTML5 apps
arq5x/foreign
Modified or extracted from other programs
arq5x/hawk
header awk: awk with _named_ variables
arq5x/bedtools-galaxy
Public repository.
arq5x/chrom_sweep
Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.
arq5x/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
arq5x/cruzdb
python access to UCSC genomes database
arq5x/Hydra
Public repository.
arq5x/knotty
A comprehensive SV discovery suite.
arq5x/kway-mergesort
A templated C++ API for memory-assisted, k-way merge sorts
arq5x/bedtools
A powerful toolset for genome arithmetic.
arq5x/bamtools
API and toolkit for reading, writing, and manipulating BAM (genome alignment) files
arq5x/filo
Useful FILe and stream Operations
arq5x/bedtools-python
A Python interface to the BEDTools API using Cython