argriffing/nxmctree
Markov chain algorithms on a Python NetworkX tree.
Developer Profile
argriffing
Discovered public repositories for argriffing in the GitHub catalog.
argriffing/fels-reml-jan-2014
Math related to branch length estimation for Brownian motion continuous character evolution on unrooted phylogenies.
argriffing/scipy.org
Scipy.org web site source code
argriffing/em-dec-2013
maximum likelihood estimation for a model with missing data
argriffing/hp
obscure algorithms related to 2d hp folding
argriffing/uglogit
ugly multinomial logistic regression
argriffing/modifiedClemensCode
Used to store modified version of Clemens code, some horrible changes were made
argriffing/statsmodels
Statsmodels: statistical modeling and econometrics in Python
argriffing/qutip
QuTiP: Quantum Toolbox in Python
argriffing/AdiaQC
Adiabatic quantum computation solver used to solve various problems (machine learning problems included).
argriffing/raoteh
leaf-conditioned mcmc according to a markov jump process on a tree
argriffing/scipy-build-makefile
Makefile for easier development of Scipy
argriffing/scipy
Scipy main repository
argriffing/cmedb
vaporware computational molecular evolution command line suite using small sqlite databases for input and output
argriffing/hmmlite
This should be a somewhat fast and numerically stable implementation of a subset of hidden Markov algorithms.
argriffing/pytpcore
This may become a Cython-based accelerator for scalar functions in AlgoPy.
argriffing/pykimuracore
This should be an implementation of some of Motoo Kimura's population genetic theory in Cython.
argriffing/pytbeaglehon
python wrapper around beagle-lib library for calculation of likelihoods on phylogenetic trees
argriffing/pyfelscore
this is like a bad version of beagle-lib
argriffing/pyvqcore
A Cython module for the internals of a kmeans algorithm.
argriffing/bigkmeans
An implementation of Lloyd's kmeans clustering algorithm for data sets that contain many points.
argriffing/numpy
Numpy main repository
argriffing/slowedml
A slow implementation of some common functions associated with a weird codon rate matrix.
argriffing/omnomnomial
a python package for quickly building large dense multinomial transition matrices using cython
argriffing/fwdsimhack1301
attempt to sample from a population genetic equilibrium for an unreusably specific stochastic process
argriffing/yolo-tyrion
this will be some unpolished research code
argriffing/pyipopt
A Python connector to IPOPT
argriffing/algopy
AlgoPy is a Research Prototype for Algorithmic Differentation in Python
argriffing/fwdsimhack1209
a particularly inflexible population genetic forward simulator
argriffing/splitalg
tree split algebra
argriffing/labsoup
A starter kit for exploratory programming.
argriffing/ncsuthesis
A LaTeX thesis class conforming to NC State ETD guidelines
argriffing/sympy
A computer algebra system written in pure Python
argriffing/DendroPy
A Python library for phylogenetic scripting, simulation, data processing and manipulation.
argriffing/minimax
Solve a specific puzzle in game theory.
argriffing/xgtex
python code to organize, build, and host a collection of tex documents
argriffing/pyphylip
a python module to read and write phylip alignment files
argriffing/mapp-20100525
analysis
argriffing/quiver
graph transformation
argriffing/hello-memoryview
This is an example usage of Python's new-style buffer API.
argriffing/fungus-pca
scripts to support analysis of some fungus data
argriffing/dgrp-unofficial
misc notes
argriffing/hpc
hpc related notes and scripts
argriffing/snppack
a SNP model
argriffing/eigensoft
principal components population genetics analysis on linux
argriffing/bintools
Simple utilities to manipulate binary data streams.
argriffing/BAli-Phy
Bayesian co-estimation of phylogenies and multiple alignments via MCMC
argriffing/piledriver
Turn a perfectly good pileup file into an incomprehensible binary mess.
argriffing/iterutils
python itertools recipes
argriffing/drosophiline
Let's analyze some data.