alneberg/public_notebooks
Ipython notebooks shared with the public
Developer Profile
alneberg
Discovered public repositories for alneberg in the GitHub catalog.
alneberg/cosmid
Genomics database manager
alneberg/alneberg.github.io
Personal Blog
alneberg/environmentmicrobedb
A Ruby on Rails application for microbial diversity data from natural environments
alneberg/GroopM
Metagenomic binning suite
alneberg/bcbio-nextgen-deploy
Suite of scripts to automatically deploy nextgen pipeline
alneberg/msc_thesis.scripts
The scripts used in msc_thesis project.
alneberg/cookiecutter-project-template
Template for creating my preferred project structure for bioinformatic projects.
alneberg/bu
Bioinformatic Utilities
alneberg/concoctR
Run CONCOCT in a burst on UPPMAX for thesis project.
alneberg/kitchen_duty
Corridor Rules for Kitchen Duty
alneberg/concoct-graphs
Minimal web server to handle nvd3 plotting for thesis project
alneberg/pycrumbs
Bits and bytes of Python from the Internet
alneberg/CONCOCT
Clustering cONtigs with COverage and ComposiTion
alneberg/scilifelab.genologics.epp_scripts
Various site specific scripts used at SciLifeLab to be used with Genologics Clarity LIMS
alneberg/test
test
alneberg/genomics-status
Public repository.
alneberg/alneberg.com
Personal (family) web page source code
alneberg/bcbio-nextgen
Best-practice pipelines for fully automated high throughput sequencing analysis
alneberg/scilifelab
Misc code snippets for Science For Life Laboratory
alneberg/genologics
Python interface to the GenoLogics LIMS server via its REST API.
alneberg/bic_gaussian
Public repository.
alneberg/pdf-logger
Log your experiments directly to a nicely formatted pdf.
alneberg/python_koans
Python Koans - Learn Python through TDD
alneberg/alneberg
pythonkurs
alneberg/exon_protein_domain
Correlation of protein domains with exon boundaries.