a-slide/blastpy3
Simple and lightweight Python 3 wrapper module for NCBI BLAST+
Developer Profile
a-slide
Discovered public repositories for a-slide in the GitHub catalog.
a-slide/RefMasker
Hard mask homologies between fasta reference sequences identified by Blastn
a-slide/pyFastq
Simple python 2.7 librarie to parse fastq files and handle illumina 1.8+ fastq sequences
a-slide/iPython-Notebook
Repo to store my iPython notebooks for NGS data analases
a-slide/Sekator
Multithreaded quality and adapter trimmer for PAIRED fastq files (Python2.7/Cython/C)
a-slide/Quade
Demultiplexer for PAIRED fastq files based on index sequence and PHRED quality (pure python)
a-slide/pyDNA3
Collection of python 3+ Utilities and Wrapper for DNA / NGS data manipulation
a-slide/Find_overlap_reads
Parse a BAM file and extract reads ovelapping given genomic coordinates
a-slide/presentation_repo
Public repository.
a-slide/BASH_NGS_Tools
Collection of simple NGS tools
a-slide/ContaVect
Complete suite to analyse DNA contaminants of virus/vector preparation from NGS data
a-slide/pyDNA
Collection of python 2.7 Utilities and Wrapper for DNA / NGS data manipulation
a-slide/MirStat
Simple tool to analyze miRNA QPCR data
a-slide/IsFinder
IsFinder find virus insertion site in host genomic DNA from pair end NGS data
a-slide/TaqMDA
Multi-dimensional analyse for RT QPCR data obtained from Taqman QPCR arrays
a-slide/Isis
ISIS generates random insertion sites of a given viral DNA in an host DNA and output Fastq Files
a-slide/Chimera_Finder
These BASH script allow to extract chimeric pairs and chimeric reads from NGS data mixing 2 DNA references
a-slide/fastq_control_sampler
Generates control fastq files R1 and R2 from fasta reference sequences
a-slide/generateur_genotypes
Entrée = taille de génotype/haplotype + nombre d'haplotype + nombre de génotype + nombre d’ambiguïté max/ genotype Sortie = fichier contenant une liste de génotype + fichier "solution" contenant la même liste de génotype, mais avec les haplotypes à l'origine intercalés
a-slide/haplotype_inference
Projet TP algo