Y-Lammers/Expand_BLAST
Expand the tsv output from either the BLAST_wrapper or HTS-barcode-checker pipeline with the number of reads for each cluster (based on CD-hit clustering).
Developer Profile
Y-Lammers
Discovered public repositories for Y-Lammers in the GitHub catalog.
Y-Lammers/BLAST_wrapper
A wrapper for either running local BLAST searches with the NCBI-BLAST+ tool or online BLAST searches with the Bio-Python module.
Y-Lammers/FASTQ_Filter
Small Script to trim and filter FASTQ reads.
Y-Lammers/Split_on_Primer
Split a FASTQ or FASTA file into sub files based on the primers used.
Y-Lammers/CD-HIT-Filter
Script for filtering the cluster created by CD-HIT based on the minimum number of reads per cluster.
Y-Lammers/Cites-checker
Pipeline for BLAST analysis of IonTorrent DNA barcoding data
Y-Lammers/Split_sequence
Split a sequence file into sub files based on the tags or primers used
Y-Lammers/Cluster-pipeline
454 sequence clustering and identification