Sage-Bionetworks/bridge-cookbooks
Public repository.
Developer Profile
Sage-Bionetworks
Discovered public repositories for Sage-Bionetworks in the GitHub catalog.
Sage-Bionetworks/DOSE
Code from the paper Simulation Studies as Designed Experiments
Sage-Bionetworks/BridgePF
DEPRECATED in favor of BridgeServer2
Sage-Bionetworks/Synapse-Markdown
Synapse Markdown Processor code
Sage-Bionetworks/ICGCSynapseGlue
This code connects the approved user list from ICGC to the Synapse approved participants list in the ICGC Dream 8.5 Challenge.
Sage-Bionetworks/Interactome
Public repository.
Sage-Bionetworks/ctdd
cancer target drug discovery network
Sage-Bionetworks/EvaluationMailSync
EvaluationMailSync
Sage-Bionetworks/synapse-admin
An administration client for Synapse
Sage-Bionetworks/jmeter_ncbo
Test performance of self-hosted Annotator service vs. NCBO-hosted Annotator service
Sage-Bionetworks/Re-Attractor-Metagenes
Re-create Attractor Metagenes from PLoS Computation Biology Paper (Cheng et al)
Sage-Bionetworks/STM_clearScience
Source code for creating figures in STM paper
Sage-Bionetworks/vcf2maf
Convert VCF (Variant Call Format) into TCGA MAF (Mutation Annotation Format)
Sage-Bionetworks/service-redirect
Simple services for redirecting from one host to another.
Sage-Bionetworks/CRC-RASness
Public repository.
Sage-Bionetworks/Synapse-Monitor
Simple Web Application for monitoring objects in Synapse
Sage-Bionetworks/predictiveModeling
Public repository.
Sage-Bionetworks/snm
Supervised Normalization of Microarrays (snm)
Sage-Bionetworks/synapsePythonClient
Programmatic interface to Synapse services for Python
Sage-Bionetworks/Synapse-Stack-Builder
Project for building a complete Synapse Stack
Sage-Bionetworks/SynapseSmokeTest
Smoke test for Synapse deployment
Sage-Bionetworks/Synapse-Repository-Services
The Synapse Repository Services project is the home of the JSON REST web services for Synapse.
Sage-Bionetworks/schema-to-pojo
The schema-to-pojo project was started because we wanted to programmatically generate the Plain Old Java Objects (POJOs) from JSON schemas. More specifically we wanted to use the generated POJOs as resources of the Synapse JSON REST web services API. Since we are using the POJOs as REST resources we also wanted an easy way to marsh instances to/from JSON. Lastly, we also wanted to use the generated POJOs in our Google Web Toolkit (GWT) client-side code and server side code. Thus the schema-to-pojo project was born. Learn more at the folllowing wiki:
Sage-Bionetworks/SynapseWebClient
The web client of the Synapse REST service core
Sage-Bionetworks/bfrmSidebySide
Testing the R package against the native binary
Sage-Bionetworks/Glioblastoma-Exploration
Scouring the Glioblastoma (GBM) TCGA expression data for molecular signatures indicative of survival benefit
Sage-Bionetworks/bfrmTest
Public repository.
Sage-Bionetworks/synapsify-demo
Source for demo analyses for Synapsify
Sage-Bionetworks/synapsify-tests
testing functionality
Sage-Bionetworks/bfrm
Bayesian Factor Regression Model (BFRM) techniques from West group at Duke - wrappers written to integrate as an R package to call platform-specific executable.
Sage-Bionetworks/sessionTools
Store, load and teleport R sessions.
Sage-Bionetworks/sss
Shotgun Stochastic Search (SSS) from Hans, Dobra and West (http://pubs.amstat.org/doi/abs/10.1198/016214507000000121) - wrappers written to integrate as an R package to call platform-specific executable.
Sage-Bionetworks/rSynapseClient
The R programmatic interface to Synapse services
Sage-Bionetworks/rHDF5
Access HDF5 files from R. Based on a package originally authored by Roy Kuraisa, Wilson Lau and Jason Eglin at Merck & Co. that was donated to Sage Bionetworks.