PBR/SemGem
Semantic genebank integration
Developer Profile
PBR
Discovered public repositories for PBR in the GitHub catalog.
PBR/BreeDB-Lite
BreeDB is a relational database which aims to support breeding for quantitative agronomical traits. The database can be explored through a web-based interface, which offers tools to present basic statistical overviews such as box plots , histograms, but also multivariate tools. Graphical genotyping tools are available to show molecular marker data and QTL data in relation to genetic linkage maps. In addition, photos of each accession can be shown together with a detailed report of observations made on this accession.
PBR/path2gene
Public repository.
PBR/pedigreeSim
PedigreeSim is software that generates simulated genetic marker data of individuals in pedigreed populations. A population can consist of either diploid or tetraploid individuals. PedigreeSim can simulate meioses with or without chiasma interference, and in tetraploids it can simulate meioses with two bivalents or one quadrivalent per set of hom(oe)ologous chromosomes. Also varying probabilities of preferential versus random pairing of chromosomes can be simulated, allowing to simulate amphidiploids as well as autotetraploids and intermediate forms.
PBR/MQ2_Web
A simple web interface for MQ2 to process output from MapQTL analysis.
PBR/MQ2
A simple python module to process output from MapQTL analysis.
PBR/jChebi2gene
Java library to automatically link a chebi compound/identifier to a metabolic pathway or genes from the tomato genome.
PBR/chebi2gene
Public repository.
PBR/pbr.github.com
Description Wageningen UR Plant Breeding github repository
PBR/Marker2Sequence
Explore QTL regions for candidate genes.
PBR/MySQLdbCompare
Compare copies of MySQL db schemas
PBR/AdvBioInfo_2012
Advanced Bioinformatics Course 2012
PBR/gff2RDF
Convert the genome annotation of some crops into RDF