Mouse-Imaging-Centre/Mouse-Imaging-Centre.github.io
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Mouse-Imaging-Centre
Discovered public repositories for Mouse-Imaging-Centre in the GitHub catalog.
Mouse-Imaging-Centre/py_minc
py_minc is a python module for working with MINC data format files, and was developed by John G. Sled.
Mouse-Imaging-Centre/generate_deformation_fields
Given an input Jacobian determinant, this code will generate a deformation field that produces that Jacobian field. (Made for MINC format files)
Mouse-Imaging-Centre/minc-stuffs
Scripts and bits of code for minc files.
Mouse-Imaging-Centre/tagtoxfm_bspline
tagtoxfm_bspline is a program to read a set of tag points and create an approximate grid transform using tensor cubic B splines. The output transformation is of .xfm format used by MINC files (https://github.com/BIC-MNI/minc) Created: April 7, 2006, John G. Sled using code from tagtoxfm by Peter Neelin
Mouse-Imaging-Centre/minclaplace
Laplace's equation for measuring thickness (or other uses of streamlines) between two boundaries
Mouse-Imaging-Centre/RMINC
Statistics for MINC volumes: A library to integrate voxel-based statistics for MINC volumes into the R environment. Supports getting and writing of MINC volumes, running voxel-wise linear models, correlations, etc.; correcting for multiple comparisons using the False Discovery Rate, and more. With contributions from Jason Lerch, Chris Hammill, Jim Nikelski and Matthijs van Eede. Some additional information can be found here:
Mouse-Imaging-Centre/pyminc
A python interface to the MINC 2 library, allowing use of numpy arrays to access MINC data, and other such similar goodies, developed by Jason Lerch
Mouse-Imaging-Centre/brain-view2
Public repository.
Mouse-Imaging-Centre/Image-Registration-Quarantine-Makefile
Provides a Makefile based on Vlad Fonov's Makefile from the EZminc package, and includes additional packages that allow you to build a full quarantine capable of image registration (geared by default to MRI mouse brain registration)
Mouse-Imaging-Centre/pydpiper
Python code for flexible pipeline control