JohnReid/cacto
A non-parametric sequence model
Developer Profile
JohnReid
Discovered public repositories for JohnReid in the GitHub catalog.
JohnReid/boost-indexing-suite
Boost indexing suite v2 code developed by Raoul Gough.
JohnReid/biopsy
C++ and python code for sequence analysis related to transcriptional regulation
JohnReid/Vim-R-plugin
Plugin to work with R (forked for development only)
JohnReid/spearmint
Spearmint is a package to perform Bayesian optimization according to the algorithms outlined in the paper: Practical Bayesian Optimization of Machine Learning Algorithms. Jasper Snoek, Hugo Larochelle and Ryan P. Adams. Advances in Neural Information Processing Systems, 2012
JohnReid/vim-latex
A fork of the vim-latex project (http://sourceforge.net/projects/vim-latex/files)
JohnReid/HMM
An implementation of various order discrete Markov models for sequence analysis. Coded in a generic programming style using C++ templates with a python interface.
JohnReid/STEME
An efficient accurate motif finder based on MEME and implemented using suffix arrays
JohnReid/infpy
A python package that implements some models and inference techniques
JohnReid/pyicl
A python wrapper for boost interval container library
JohnReid/Cookbook
A collection of useful python code
JohnReid/pyseqan
Python interface to some of the SeqAn sequence analysis library functionality
JohnReid/ipython
Official repository for IPython itself. Other repos in the IPython organization contain things like the website, documentation builds, etc.
JohnReid/myrrh
A library of useful C++ code, some related to boost.python, some related to the Seqan library
JohnReid/pybool
A python package to infer Boolean regulatory networks
JohnReid/bioinf-utilities
A collection of (largely python based) bioinformatic utilities
JohnReid/scripts
Handy scripts
JohnReid/dotfiles
My configuration files (.tmux.conf, .vimrc, .bashrc, .gitconfig, etc)
JohnReid/Patilon
Python library to download flash files